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view test-data/emma_parts/p9_mruby2.gb @ 9:c3951e41e488 draft default tip
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit ed922f834f891e6048385803c3004465551c911d-dirty
| author | tduigou |
|---|---|
| date | Thu, 07 Aug 2025 12:37:19 +0000 |
| parents | 4bde3e90ee98 |
| children |
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LOCUS . 2529 bp DNA UNK 01-JAN-1980 DEFINITION . ACCESSION <unknown id> VERSION <unknown id> KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers misc_feature complement(6..11) /note="BsmBI" terminator 86..115 /note="T3Te terminator" /note="phage T3 early transcription terminator" rep_origin 137..724 /direction=RIGHT /note="ori" /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" terminator 736..763 /note="T7Te terminator" /note="phage T7 early transcription terminator" source 5..1150 /source="Exported" promoter complement(1603..1705) /note="cat promoter" /note="promoter of the E. coli cat gene" terminator 1706..1737 /note="tonB terminator" /note="bidirectional E. coli tonB-P14 transcription terminator" misc_feature 1803..1808 /note="BsmBI" source 1155..1809 /source="Exported" CDS 1816..2523 /codon_start=1 /note="mRuby2" /product="monomeric red fluorescent protein derived from mRuby, with improved photophysical properties (Lam et al., 2012)" /translation="VSKGEELIKENMRMKVVMEGSVNGHQFKCTGEGEGNPYMGTQTMR IKVIEGGPLPFAFDILATSFMYGSRTFIKYPKGIPDFFKQSFPEGFTWERVTRYEDGGV VTVMQDTSLEDGCLVYHVQVRGVNFPSNGPVMQKKTKGWEPNTEMMYPADGGLRGYTHM ALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVDHRLERLEESDNEMFVVQREHAVA KFAGLGGGMDELYK" source 1814..2529 /source="Exported" ORIGIN 1 tgctcgagac gaaaacgaat tcaagcttga tatcattcag gacgagcctc agactccagc 61 gtaactggac tgcaatcaac tcactggctc accttcacgg gtgggccttt cttcggtaga 121 aaatcaaagg atcttcttga gatccttttt ttctgcgcgt aatctgctgc ttgcaaacaa 181 aaaaaccacc gctaccagcg gtggtttgtt tgccggatca agagctacca actctttttc 241 cgaggtaact ggcttcagca gagcgcagat accaaatact gttcttctag tgtagccgta 301 gttaggccac cacttcaaga actctgtagc accgcctaca tacctcgctc tgctaatcct 361 gttaccagtg gctgctgcca gtggcgataa gtcgtgtctt accgggttgg actcaagacg 421 atagttaccg gataaggcgc agcggtcggg ctgaacgggg ggttcgtgca cacagcccag 481 cttggagcga acgacctaca ccgaactgag atacctacag cgtgagctat gagaaagcgc 541 cacgcttccc gaagggagaa aggcggacag gtatccggta agcggcaggg tcggaacagg 601 agagcgcacg agggagcttc cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt 661 tcgccacctc tgacttgagc atcgattttt gtgatgctcg tcaggggggc ggagcctatg 721 gaaaaacgcc agcaacgcag aaaggcccac ccgaaggtga gccaggtgat tacatttggg 781 ccctcattag aaaaactcat cgagcatcaa gtgaaactgc aatttattca tatcaggatt 841 atcaatacca tatttttgaa aaagccgttt ctgtaatgaa ggagaaaact caccgaggca 901 gttccatagg atggcaagat cctggtatcg gtctgcgatt ccgactcgtc caacatcaat 961 acaacctatt aatttcccct cgtcaaaaat aaggttatca agtgagaaat caccatgagt 1021 gacgactgaa tccggtgaga atggcaaaag cttatgcatt tctttccaga cttgttcaac 1081 aggccagcca ttacgctcgt catcaaaatc actcgcacca accaaaccgt tattcattcg 1141 tgattgcgcc tgagcgagac gaaatacgcg atcgccgtta aaaggacaat tacaaacagg 1201 aatcgaatgc aaccggcgca ggaacactgc cagcgcatca acaatatttt cacctgaatc 1261 aggatattct tctaatacct ggaatgctgt tttccctggg atcgcagtgg tgagtaacca 1321 tgcatcatca ggagtacgga taaaatgctt gatggtcgga agaggcataa attccgtcag 1381 ccagtttagc ctgaccatct catctgtaac atcattggca acgctacctt tgccatgttt 1441 cagaaacaac tctggcgcat cgggcttccc atacaatcga tagattgtcg cacctgattg 1501 cccgacatta tcgcgagccc atttataccc atataaatca gcatccatgt tggaatttaa 1561 tcgcggcctc gagcaagacg tttcccgttg aatatggctc attttagctt ccttagctcc 1621 tgaaaatctc gataactcaa aaaatacgcc cggtagtgat cttatttcat tatggtgaaa 1681 gttggaacct cttacgtgcc gatcaagtca aaagcctccg gtcggaggct tttgactttc 1741 tgctatggag gtcaggtatg atttaaatgg tcagtattga gcgatatcta gagaattcgt 1801 cacgtctcgg cgtccgtgtc taagggcgaa gagctgatca aggaaaatat gcgtatgaag 1861 gtggtcatgg aaggttcggt caacggccac caattcaaat gcacaggtga aggagaaggc 1921 aatccgtaca tgggaactca aaccatgagg atcaaagtca tcgagggagg acccctgcca 1981 tttgcctttg acattcttgc cacgtcgttc atgtatggca gccgtacttt tatcaagtac 2041 ccgaaaggca ttcctgattt ctttaaacag tcctttcctg agggttttac ttgggaaaga 2101 gttacgagat acgaagatgg tggagtcgtc accgtcatgc aggacaccag ccttgaggat 2161 ggctgtctcg tttaccacgt ccaagtcaga ggggtaaact ttccctccaa tggtcccgtg 2221 atgcagaaga agaccaaggg ttgggagcct aatacagaga tgatgtatcc agcagatggt 2281 ggtctgaggg gatacactca tatggcactg aaagttgatg gtggtggcca tctgtcttgc 2341 tctttcgtaa caacttacag gtcaaaaaag accgtcggga acatcaagat gcccggtatc 2401 catgccgttg atcaccgcct ggaaaggtta gaggaaagtg acaatgaaat gttcgtagta 2461 caacgcgaac acgcagttgc caagttcgcc gggcttggtg gtgggatgga cgagctgtac 2521 aagtaataa //
