diff test-data/emma_parts/p9_mruby2.gb @ 0:4bde3e90ee98 draft

planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
author tduigou
date Wed, 06 Aug 2025 08:02:58 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emma_parts/p9_mruby2.gb	Wed Aug 06 08:02:58 2025 +0000
@@ -0,0 +1,93 @@
+LOCUS       .                       2529 bp    DNA              UNK 01-JAN-1980
+DEFINITION  .
+ACCESSION   <unknown id>
+VERSION     <unknown id>
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     misc_feature    complement(6..11)
+                     /note="BsmBI"
+     terminator      86..115
+                     /note="T3Te terminator"
+                     /note="phage T3 early transcription terminator"
+     rep_origin      137..724
+                     /direction=RIGHT
+                     /note="ori"
+                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
+                     replication"
+     terminator      736..763
+                     /note="T7Te terminator"
+                     /note="phage T7 early transcription terminator"
+     source          5..1150
+                     /source="Exported"
+     promoter        complement(1603..1705)
+                     /note="cat promoter"
+                     /note="promoter of the E. coli cat gene"
+     terminator      1706..1737
+                     /note="tonB terminator"
+                     /note="bidirectional E. coli tonB-P14 transcription
+                     terminator"
+     misc_feature    1803..1808
+                     /note="BsmBI"
+     source          1155..1809
+                     /source="Exported"
+     CDS             1816..2523
+                     /codon_start=1
+                     /note="mRuby2"
+                     /product="monomeric red fluorescent protein derived from
+                     mRuby, with improved photophysical properties (Lam et al.,
+                     2012)"
+                     /translation="VSKGEELIKENMRMKVVMEGSVNGHQFKCTGEGEGNPYMGTQTMR
+                     IKVIEGGPLPFAFDILATSFMYGSRTFIKYPKGIPDFFKQSFPEGFTWERVTRYEDGGV
+                     VTVMQDTSLEDGCLVYHVQVRGVNFPSNGPVMQKKTKGWEPNTEMMYPADGGLRGYTHM
+                     ALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVDHRLERLEESDNEMFVVQREHAVA
+                     KFAGLGGGMDELYK"
+     source          1814..2529
+                     /source="Exported"
+ORIGIN
+        1 tgctcgagac gaaaacgaat tcaagcttga tatcattcag gacgagcctc agactccagc
+       61 gtaactggac tgcaatcaac tcactggctc accttcacgg gtgggccttt cttcggtaga
+      121 aaatcaaagg atcttcttga gatccttttt ttctgcgcgt aatctgctgc ttgcaaacaa
+      181 aaaaaccacc gctaccagcg gtggtttgtt tgccggatca agagctacca actctttttc
+      241 cgaggtaact ggcttcagca gagcgcagat accaaatact gttcttctag tgtagccgta
+      301 gttaggccac cacttcaaga actctgtagc accgcctaca tacctcgctc tgctaatcct
+      361 gttaccagtg gctgctgcca gtggcgataa gtcgtgtctt accgggttgg actcaagacg
+      421 atagttaccg gataaggcgc agcggtcggg ctgaacgggg ggttcgtgca cacagcccag
+      481 cttggagcga acgacctaca ccgaactgag atacctacag cgtgagctat gagaaagcgc
+      541 cacgcttccc gaagggagaa aggcggacag gtatccggta agcggcaggg tcggaacagg
+      601 agagcgcacg agggagcttc cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt
+      661 tcgccacctc tgacttgagc atcgattttt gtgatgctcg tcaggggggc ggagcctatg
+      721 gaaaaacgcc agcaacgcag aaaggcccac ccgaaggtga gccaggtgat tacatttggg
+      781 ccctcattag aaaaactcat cgagcatcaa gtgaaactgc aatttattca tatcaggatt
+      841 atcaatacca tatttttgaa aaagccgttt ctgtaatgaa ggagaaaact caccgaggca
+      901 gttccatagg atggcaagat cctggtatcg gtctgcgatt ccgactcgtc caacatcaat
+      961 acaacctatt aatttcccct cgtcaaaaat aaggttatca agtgagaaat caccatgagt
+     1021 gacgactgaa tccggtgaga atggcaaaag cttatgcatt tctttccaga cttgttcaac
+     1081 aggccagcca ttacgctcgt catcaaaatc actcgcacca accaaaccgt tattcattcg
+     1141 tgattgcgcc tgagcgagac gaaatacgcg atcgccgtta aaaggacaat tacaaacagg
+     1201 aatcgaatgc aaccggcgca ggaacactgc cagcgcatca acaatatttt cacctgaatc
+     1261 aggatattct tctaatacct ggaatgctgt tttccctggg atcgcagtgg tgagtaacca
+     1321 tgcatcatca ggagtacgga taaaatgctt gatggtcgga agaggcataa attccgtcag
+     1381 ccagtttagc ctgaccatct catctgtaac atcattggca acgctacctt tgccatgttt
+     1441 cagaaacaac tctggcgcat cgggcttccc atacaatcga tagattgtcg cacctgattg
+     1501 cccgacatta tcgcgagccc atttataccc atataaatca gcatccatgt tggaatttaa
+     1561 tcgcggcctc gagcaagacg tttcccgttg aatatggctc attttagctt ccttagctcc
+     1621 tgaaaatctc gataactcaa aaaatacgcc cggtagtgat cttatttcat tatggtgaaa
+     1681 gttggaacct cttacgtgcc gatcaagtca aaagcctccg gtcggaggct tttgactttc
+     1741 tgctatggag gtcaggtatg atttaaatgg tcagtattga gcgatatcta gagaattcgt
+     1801 cacgtctcgg cgtccgtgtc taagggcgaa gagctgatca aggaaaatat gcgtatgaag
+     1861 gtggtcatgg aaggttcggt caacggccac caattcaaat gcacaggtga aggagaaggc
+     1921 aatccgtaca tgggaactca aaccatgagg atcaaagtca tcgagggagg acccctgcca
+     1981 tttgcctttg acattcttgc cacgtcgttc atgtatggca gccgtacttt tatcaagtac
+     2041 ccgaaaggca ttcctgattt ctttaaacag tcctttcctg agggttttac ttgggaaaga
+     2101 gttacgagat acgaagatgg tggagtcgtc accgtcatgc aggacaccag ccttgaggat
+     2161 ggctgtctcg tttaccacgt ccaagtcaga ggggtaaact ttccctccaa tggtcccgtg
+     2221 atgcagaaga agaccaaggg ttgggagcct aatacagaga tgatgtatcc agcagatggt
+     2281 ggtctgaggg gatacactca tatggcactg aaagttgatg gtggtggcca tctgtcttgc
+     2341 tctttcgtaa caacttacag gtcaaaaaag accgtcggga acatcaagat gcccggtatc
+     2401 catgccgttg atcaccgcct ggaaaggtta gaggaaagtg acaatgaaat gttcgtagta
+     2461 caacgcgaac acgcagttgc caagttcgcc gggcttggtg gtgggatgga cgagctgtac
+     2521 aagtaataa
+//