Mercurial > repos > tduigou > create_assembly_picklists
diff test-data/emma_parts/p9_mruby2.gb @ 0:4bde3e90ee98 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
| author | tduigou |
|---|---|
| date | Wed, 06 Aug 2025 08:02:58 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/emma_parts/p9_mruby2.gb Wed Aug 06 08:02:58 2025 +0000 @@ -0,0 +1,93 @@ +LOCUS . 2529 bp DNA UNK 01-JAN-1980 +DEFINITION . +ACCESSION <unknown id> +VERSION <unknown id> +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + misc_feature complement(6..11) + /note="BsmBI" + terminator 86..115 + /note="T3Te terminator" + /note="phage T3 early transcription terminator" + rep_origin 137..724 + /direction=RIGHT + /note="ori" + /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of + replication" + terminator 736..763 + /note="T7Te terminator" + /note="phage T7 early transcription terminator" + source 5..1150 + /source="Exported" + promoter complement(1603..1705) + /note="cat promoter" + /note="promoter of the E. coli cat gene" + terminator 1706..1737 + /note="tonB terminator" + /note="bidirectional E. coli tonB-P14 transcription + terminator" + misc_feature 1803..1808 + /note="BsmBI" + source 1155..1809 + /source="Exported" + CDS 1816..2523 + /codon_start=1 + /note="mRuby2" + /product="monomeric red fluorescent protein derived from + mRuby, with improved photophysical properties (Lam et al., + 2012)" + /translation="VSKGEELIKENMRMKVVMEGSVNGHQFKCTGEGEGNPYMGTQTMR + IKVIEGGPLPFAFDILATSFMYGSRTFIKYPKGIPDFFKQSFPEGFTWERVTRYEDGGV + VTVMQDTSLEDGCLVYHVQVRGVNFPSNGPVMQKKTKGWEPNTEMMYPADGGLRGYTHM + ALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVDHRLERLEESDNEMFVVQREHAVA + KFAGLGGGMDELYK" + source 1814..2529 + /source="Exported" +ORIGIN + 1 tgctcgagac gaaaacgaat tcaagcttga tatcattcag gacgagcctc agactccagc + 61 gtaactggac tgcaatcaac tcactggctc accttcacgg gtgggccttt cttcggtaga + 121 aaatcaaagg atcttcttga gatccttttt ttctgcgcgt aatctgctgc ttgcaaacaa + 181 aaaaaccacc gctaccagcg gtggtttgtt tgccggatca agagctacca actctttttc + 241 cgaggtaact ggcttcagca gagcgcagat accaaatact gttcttctag tgtagccgta + 301 gttaggccac cacttcaaga actctgtagc accgcctaca tacctcgctc tgctaatcct + 361 gttaccagtg gctgctgcca gtggcgataa gtcgtgtctt accgggttgg actcaagacg + 421 atagttaccg gataaggcgc agcggtcggg ctgaacgggg ggttcgtgca cacagcccag + 481 cttggagcga acgacctaca ccgaactgag atacctacag cgtgagctat gagaaagcgc + 541 cacgcttccc gaagggagaa aggcggacag gtatccggta agcggcaggg tcggaacagg + 601 agagcgcacg agggagcttc cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt + 661 tcgccacctc tgacttgagc atcgattttt gtgatgctcg tcaggggggc ggagcctatg + 721 gaaaaacgcc agcaacgcag aaaggcccac ccgaaggtga gccaggtgat tacatttggg + 781 ccctcattag aaaaactcat cgagcatcaa gtgaaactgc aatttattca tatcaggatt + 841 atcaatacca tatttttgaa aaagccgttt ctgtaatgaa ggagaaaact caccgaggca + 901 gttccatagg atggcaagat cctggtatcg gtctgcgatt ccgactcgtc caacatcaat + 961 acaacctatt aatttcccct cgtcaaaaat aaggttatca agtgagaaat caccatgagt + 1021 gacgactgaa tccggtgaga atggcaaaag cttatgcatt tctttccaga cttgttcaac + 1081 aggccagcca ttacgctcgt catcaaaatc actcgcacca accaaaccgt tattcattcg + 1141 tgattgcgcc tgagcgagac gaaatacgcg atcgccgtta aaaggacaat tacaaacagg + 1201 aatcgaatgc aaccggcgca ggaacactgc cagcgcatca acaatatttt cacctgaatc + 1261 aggatattct tctaatacct ggaatgctgt tttccctggg atcgcagtgg tgagtaacca + 1321 tgcatcatca ggagtacgga taaaatgctt gatggtcgga agaggcataa attccgtcag + 1381 ccagtttagc ctgaccatct catctgtaac atcattggca acgctacctt tgccatgttt + 1441 cagaaacaac tctggcgcat cgggcttccc atacaatcga tagattgtcg cacctgattg + 1501 cccgacatta tcgcgagccc atttataccc atataaatca gcatccatgt tggaatttaa + 1561 tcgcggcctc gagcaagacg tttcccgttg aatatggctc attttagctt ccttagctcc + 1621 tgaaaatctc gataactcaa aaaatacgcc cggtagtgat cttatttcat tatggtgaaa + 1681 gttggaacct cttacgtgcc gatcaagtca aaagcctccg gtcggaggct tttgactttc + 1741 tgctatggag gtcaggtatg atttaaatgg tcagtattga gcgatatcta gagaattcgt + 1801 cacgtctcgg cgtccgtgtc taagggcgaa gagctgatca aggaaaatat gcgtatgaag + 1861 gtggtcatgg aaggttcggt caacggccac caattcaaat gcacaggtga aggagaaggc + 1921 aatccgtaca tgggaactca aaccatgagg atcaaagtca tcgagggagg acccctgcca + 1981 tttgcctttg acattcttgc cacgtcgttc atgtatggca gccgtacttt tatcaagtac + 2041 ccgaaaggca ttcctgattt ctttaaacag tcctttcctg agggttttac ttgggaaaga + 2101 gttacgagat acgaagatgg tggagtcgtc accgtcatgc aggacaccag ccttgaggat + 2161 ggctgtctcg tttaccacgt ccaagtcaga ggggtaaact ttccctccaa tggtcccgtg + 2221 atgcagaaga agaccaaggg ttgggagcct aatacagaga tgatgtatcc agcagatggt + 2281 ggtctgaggg gatacactca tatggcactg aaagttgatg gtggtggcca tctgtcttgc + 2341 tctttcgtaa caacttacag gtcaaaaaag accgtcggga acatcaagat gcccggtatc + 2401 catgccgttg atcaccgcct ggaaaggtta gaggaaagtg acaatgaaat gttcgtagta + 2461 caacgcgaac acgcagttgc caagttcgcc gggcttggtg gtgggatgga cgagctgtac + 2521 aagtaataa +//
