Mercurial > repos > tduigou > create_assembly_picklists
diff test-data/emma_parts/p19_mruby2.gb @ 0:4bde3e90ee98 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
| author | tduigou |
|---|---|
| date | Wed, 06 Aug 2025 08:02:58 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/emma_parts/p19_mruby2.gb Wed Aug 06 08:02:58 2025 +0000 @@ -0,0 +1,99 @@ +LOCUS . 2532 bp DNA UNK 01-JAN-1980 +DEFINITION . +ACCESSION <unknown id> +VERSION <unknown id> +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + terminator 392..419 + /note="T7Te terminator" + /note="phage T7 early transcription terminator" + rep_origin complement(431..1018) + /direction=LEFT + /note="ori" + /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of + replication" + terminator 1040..1069 + /note="T3Te terminator" + /note="phage T3 early transcription terminator" + misc_feature 1143..1148 + /note="BsmBI" + source 5..1149 + /source="Exported" + misc_feature 1154..1164 + /note="KozaK" + CDS 1162..1164 + /codon_start=1 + /note="ATG" + /translation="M" + CDS 1165..1872 + /codon_start=1 + /note="mRuby2" + /product="monomeric red fluorescent protein derived from + mRuby, with improved photophysical properties (Lam et al., + 2012)" + /translation="VSKGEELIKENMRMKVVMEGSVNGHQFKCTGEGEGNPYMGTQTMR + IKVIEGGPLPFAFDILATSFMYGSRTFIKYPKGIPDFFKQSFPEGFTWERVTRYEDGGV + VTVMQDTSLEDGCLVYHVQVRGVNFPSNGPVMQKKTKGWEPNTEMMYPADGGLRGYTHM + ALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVDHRLERLEESDNEMFVVQREHAVA + KFAGLGGGMDELYK" + source 1154..1872 + /source="Exported" + misc_feature complement(1878..1883) + /note="BsmBI" + terminator 1950..1981 + /note="tonB terminator" + /note="bidirectional E. coli tonB-P14 transcription + terminator" + promoter 1982..2084 + /note="cat promoter" + /note="promoter of the E. coli cat gene" + source 1877..2532 + /source="Exported" +ORIGIN + 1 ctcaggcgca atcacgaatg aataacggtt tggttggtgc gagtgatttt gatgacgagc + 61 gtaatggctg gcctgttgaa caagtctgga aagaaatgca taagcttttg ccattctcac + 121 cggattcagt cgtcactcat ggtgatttct cacttgataa ccttattttt gacgagggga + 181 aattaatagg ttgtattgat gttggacgag tcggaatcgc agaccgatac caggatcttg + 241 ccatcctatg gaactgcctc ggtgagtttt ctccttcatt acagaaacgg ctttttcaaa + 301 aatatggtat tgataatcct gatatgaata aattgcagtt tcacttgatg ctcgatgagt + 361 ttttctaatg agggcccaaa tgtaatcacc tggctcacct tcgggtgggc ctttctgcgt + 421 tgctggcgtt tttccatagg ctccgccccc ctgacgagca tcacaaaaat cgatgctcaa + 481 gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct + 541 ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc + 601 cttcgggaag cgtggcgctt tctcatagct cacgctgtag gtatctcagt tcggtgtagg + 661 tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct + 721 tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag + 781 cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga + 841 agtggtggcc taactacggc tacactagaa gaacagtatt tggtatctgc gctctgctga + 901 agccagttac ctcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg + 961 tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga + 1021 agatcctttg attttctacc gaagaaaggc ccacccgtga aggtgagcca gtgagttgat + 1081 tgcagtccag ttacgctgga gtctgaggct cgtcctgaat gatatcaagc ttgaattcgt + 1141 tacgtctcgg tgcccgccac catggtgtct aagggcgaag agctgatcaa ggaaaatatg + 1201 cgtatgaagg tggtcatgga aggttcggtc aacggccacc aattcaaatg cacaggtgaa + 1261 ggagaaggca atccgtacat gggaactcaa accatgagga tcaaagtcat cgagggagga + 1321 cccctgccat ttgcctttga cattcttgcc acgtcgttca tgtatggcag ccgtactttt + 1381 atcaagtacc cgaaaggcat tcctgatttc tttaaacagt cctttcctga gggttttact + 1441 tgggaaagag ttacgagata cgaagatggt ggagtcgtca ccgtcatgca ggacaccagc + 1501 cttgaggatg gctgtctcgt ttaccacgtc caagtcagag gggtaaactt tccctccaat + 1561 ggtcccgtga tgcagaagaa gaccaagggt tgggagccta atacagagat gatgtatcca + 1621 gcagatggtg gtctgagggg atacactcat atggcactga aagttgatgg tggtggccat + 1681 ctgtcttgct ctttcgtaac aacttacagg tcaaaaaaga ccgtcgggaa catcaagatg + 1741 cccggtatcc atgccgttga tcaccgcctg gaaaggttag aggaaagtga caatgaaatg + 1801 ttcgtagtac aacgcgaaca cgcagttgcc aagttcgccg ggcttggtgg tgggatggac + 1861 gagctgtaca agagcgcgag acgaagacga attctctaga tatcgctcaa tactgaccat + 1921 ttaaatcata cctgacctcc atagcagaaa gtcaaaagcc tccgaccgga ggcttttgac + 1981 ttgatcggca cgtaagaggt tccaactttc accataatga aataagatca ctaccgggcg + 2041 tattttttga gttatcgaga ttttcaggag ctaaggaagc taaaatgagc catattcaac + 2101 gggaaacgtc ttgctcgagg ccgcgattaa attccaacat ggatgctgat ttatatgggt + 2161 ataaatgggc tcgcgataat gtcgggcaat caggtgcgac aatctatcga ttgtatggga + 2221 agcccgatgc gccagagttg tttctgaaac atggcaaagg tagcgttgcc aatgatgtta + 2281 cagatgagat ggtcaggcta aactggctga cggaatttat gcctcttccg accatcaagc + 2341 attttatccg tactcctgat gatgcatggt tactcaccac tgcgatccca gggaaaacag + 2401 cattccaggt attagaagaa tatcctgatt caggtgaaaa tattgttgat gcgctggcag + 2461 tgttcctgcg ccggttgcat tcgattcctg tttgtaattg tccttttaac ggcgatcgcg + 2521 tatttcgtct cg +//
