Mercurial > repos > tduigou > create_assembly_picklists
comparison create_assembly_picklists.xml @ 7:9f35d1450906 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit ed922f834f891e6048385803c3004465551c911d-dirty
| author | tduigou |
|---|---|
| date | Thu, 07 Aug 2025 12:26:04 +0000 |
| parents | efd0c39c6bee |
| children | bce1347453ee |
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| 6:efd0c39c6bee | 7:9f35d1450906 |
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| 337 This section is to multiplie the backbone concentration with the part:backbone molar ratio. This tricks the calculator into making a picklist with the desired ratio. For example, a part:backbone = 2:1 will multiply the backbone concentration by 2, therefore half as much of it will be added to the well. | 337 This section is to multiplie the backbone concentration with the part:backbone molar ratio. This tricks the calculator into making a picklist with the desired ratio. For example, a part:backbone = 2:1 will multiply the backbone concentration by 2, therefore half as much of it will be added to the well. |
| 338 **If Part quantity unit is ng**: Backbone Molar Ratio calculation is not performed in this case. | 338 **If Part quantity unit is ng**: Backbone Molar Ratio calculation is not performed in this case. |
| 339 | 339 |
| 340 **Mode**: | 340 **Mode**: |
| 341 --------- | 341 --------- |
| 342 This option allows you to choose the mode in which the tool will be executed: | 342 This option allows you to choose the mode in which the tool will be executed: |
| 343 * **Standard**: Runs the tool as a standalone application. | 343 * **Standard**: Runs the tool as a standalone application. |
| 344 * **DEMO**: Runs the tool as a standalone application with default parameters adapted to the demo dataset: | 344 * **DEMO**: Runs the tool as a standalone application with default parameters adapted to the demo dataset: |
| 345 - GenBank File(s): `Download... <https://files.osf.io/v1/resources/x2sj3/providers/osfstorage/689496483e21964670f62efc/?zip=>`_ NOTE: make files as collection list (`How to make collection <https://training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/collections/tutorial.html>`_) | 345 - GenBank File(s): `Download... <https://files.osf.io/v1/resources/x2sj3/providers/osfstorage/689496483e21964670f62efc/?zip=>`_ NOTE: make files as collection list (`How to make collection <https://training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/collections/tutorial.html>`_) |
| 346 - Assembly Plan (csv or excel): `Download... <https://osf.io/download/6894965a96fb8cc5376b0c92/>`_ | 346 - Assembly Plan (csv or excel): `Download... <https://osf.io/download/6894965a96fb8cc5376b0c92/>`_ |
| 347 - Source Plate (excel): `Download... <https://osf.io/download/6894965b7d01c1cf281b52d3/>`_ | 347 - Source Plate (excel): `Download... <https://osf.io/download/6894965b7d01c1cf281b52d3/>`_ |
| 348 ]]></help> | 348 ]]></help> |
| 349 <citations> | 349 <citations> |
| 350 <citation type="bibtex"> | 350 <citation type="bibtex"> |
| 351 @unpublished{create_assembly_picklists | 351 @unpublished{create_assembly_picklists |
| 352 author = {Ramiz Khaled}, | 352 author = {Ramiz Khaled}, |
| 353 title = {{create_assembly_picklists}}, | 353 title = {{create_assembly_picklists}}, |