Mercurial > repos > tduigou > cloning_simulation

comparison cloning_simulation.py @ 9:eaff3028ba07 draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Mon, 26 May 2025 09:43:40 +0000
parents 07e902da89ad
children be6889ab2df8
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8:07e902da89ad 9:eaff3028ba07
83 os.rename(csv_file, new_csvname) 83 os.rename(csv_file, new_csvname)
84 84
85 assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet( 85 assembly_plan = dnacauldron.AssemblyPlan.from_spreadsheet(
86 name="auto_from_filename", 86 name="auto_from_filename",
87 path=new_csvname, 87 path=new_csvname,
88 header=[0], 88 dataframe=None,
89 header=None,
89 assembly_class=assembly_class 90 assembly_class=assembly_class
90 ) 91 )
91 if enzyme != 'auto': 92 if enzyme != 'auto':
92 for assembly in assembly_plan.assemblies: 93 for assembly in assembly_plan.assemblies:
93 assembly.enzyme = enzyme 94 assembly.enzyme = enzyme