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comparison cloning_similation.xml @ 1:32e44a646b68 draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 16 May 2025 09:41:19 +0000
parents dc450979fcd4
children 3171db614963
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0:dc450979fcd4 1:32e44a646b68
38 --enzyme '$adv.enzyme' 38 --enzyme '$adv.enzyme'
39 --topology '$topology'&& 39 --topology '$topology'&&
40 cp 'output_zip.zip' '$output_zip' 40 cp 'output_zip.zip' '$output_zip'
41 ]]></command> 41 ]]></command>
42 <inputs> 42 <inputs>
43 <param name="genbank_files" type="data_collection" collection_type="list" format="genbank,fasta" label="GenBank File(s)"/> 43 <param name="genbank_files" type="data_collection" collection_type="list" format="genbank,fasta" label="GenBank and/or Fasta File(s)"/>
44 <param name="assembly_csv" type="data" format="csv" label="assemnby csv"/> 44 <param name="assembly_csv" type="data" format="csv" label="assemnby csv"/>
45 <param name="domesticated_input" type="data_collection" collection_type="list" format="genbank" label="Domesticated GenBank" value="None" optional="True"/> 45 <param name="domesticated_input" type="data_collection" collection_type="list" format="genbank" label="Domesticated GenBank" value="None" optional="True"/>
46 <param name="assembly_plan_name" type="select" label="assembly calss" help="select the assambly class"> 46 <param name="assembly_plan_name" type="select" label="assembly calss" help="select the assambly class">
47 <option value="Type2sRestrictionAssembly" selected="True">GoldenGate_assembly</option> 47 <option value="Type2sRestrictionAssembly" selected="True">GoldenGate_assembly</option>
48 <option value="GibsonAssembly">Gibson_assembly</option> 48 <option value="GibsonAssembly">Gibson_assembly</option>