Mercurial > repos > tduigou > cloning_simulation

comparison cloning_similation.xml @ 14:16ccb36aa8e3 draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Mon, 26 May 2025 11:29:13 +0000
parents 7d1778f5e164
children 074a76e84b80
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13:7d1778f5e164 14:16ccb36aa8e3
38 --outdir_simulation 'outdir_zip' 38 --outdir_simulation 'outdir_zip'
39 --outdir_gb 'outdir_gb' 39 --outdir_gb 'outdir_gb'
40 --output_simulation 'output_zip.zip' 40 --output_simulation 'output_zip.zip'
41 --enzyme '$adv.enzyme' 41 --enzyme '$adv.enzyme'
42 --topology '$topology' && 42 --topology '$topology' &&
43 cp 'output_zip.zip' '$output_zip' && echo DEBUG && ls 'outdir_gb' 43 cp 'output_zip.zip' '$output_zip'
44 ]]></command> 44 ]]></command>
45 <inputs> 45 <inputs>
46 <param name="genbank_files" type="data_collection" collection_type="list" format="genbank,fasta" label="GenBank and/or Fasta File(s)" optional="True"/> 46 <param name="genbank_files" type="data_collection" collection_type="list" format="genbank,fasta" label="GenBank and/or Fasta File(s)" optional="True"/>
47 <param name="assembly_csv" type="data" format="csv" label="Assemby csv"/> 47 <param name="assembly_csv" type="data" format="csv" label="Assemby csv"/>
48 <param name="domesticated_input" type="data_collection" collection_type="list" format="genbank" label="Domesticated GenBank" optional="True"/> 48 <param name="domesticated_input" type="data_collection" collection_type="list" format="genbank" label="Domesticated GenBank" optional="True"/>