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comparison cloning_similation.xml @ 8:07e902da89ad draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Mon, 26 May 2025 09:23:51 +0000
parents 296e5145a862
children 7d1778f5e164
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368 The Cloning Simulation tool is based on the DnaCauldron package developed by the EGF Biofoundry. It enables rapid and accurate assembly simulation of DNA parts for modular cloning systems, such as Golden Gate Assembly (complete documentation `here <https://edinburgh-genome-foundry.github.io/DnaCauldron/>`_). 368 The Cloning Simulation tool is based on the DnaCauldron package developed by the EGF Biofoundry. It enables rapid and accurate assembly simulation of DNA parts for modular cloning systems, such as Golden Gate Assembly (complete documentation `here <https://edinburgh-genome-foundry.github.io/DnaCauldron/>`_).
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370 **Parameters**: 370 **Parameters**:
371 --------------- 371 ---------------
372 * **Assemby csv**: csv file containes the construct names with their parts. 372 * **Assemby csv**: csv file containes the construct names with their parts. (Without Header)
373 * **GenBank files**: Upload all the parts sequences for your assembli(es). Don't forget the receptor vector(s). 373 * **GenBank files**: Upload all the parts sequences for your assembli(es). Don't forget the receptor vector(s).
374 * **Domesticated GenBank**: Dimesticated GenBank list (Optional) 374 * **Domesticated GenBank**: Dimesticated GenBank list (Optional)
375 * **Topology**: Can be "circular", "linear". 375 * **Topology**: Can be "circular", "linear".
376 * **Enzyme**: It will be selected automatically, or you can set one from this dictionnary : `dict <https://github.com/biopython/biopython/blob/master/Bio/Restriction/Restriction_Dictionary.py>`_ 376 * **Enzyme**: It will be selected automatically, or you can set one from this dictionnary : `dict <https://github.com/biopython/biopython/blob/master/Bio/Restriction/Restriction_Dictionary.py>`_
377 * **Assembly Class**: 377 * **Assembly Class**: