Mercurial > repos > simon-gladman > trimmomatic_032

comparison trimmomatic.xml @ 6:9db0c1c78236 draft

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Uploaded: changed output data type to "input"
author simon-gladman
date Thu, 10 Jul 2014 12:21:33 -0400
parents afc124ad65f0
children 76d1aebc44bf
comparison
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5:afc124ad65f0 6:9db0c1c78236
137 </inputs> 137 </inputs>
138 138
139 <outputs> 139 <outputs>
140 <data name="log" format="tabular" label="${tool.name} on ${on_string}: Trimmomatic Log" hidden="True"> 140 <data name="log" format="tabular" label="${tool.name} on ${on_string}: Trimmomatic Log" hidden="True">
141 </data> 141 </data>
142 <data name="fwdpairs" format="fastq" label="${tool.name} on ${on_string}: Dir1 trimmed pairs"> 142 <data name="fwdpairs" format="input" label="${tool.name} on ${on_string}: Dir1 trimmed pairs">
143 <filter>(paired['is_paired'])</filter> 143 <filter>(paired['is_paired'])</filter>
144 </data> 144 </data>
145 <data name="revpairs" format="fastq" label="${tool.name} on ${on_string}: Dir2 trimmed pairs"> 145 <data name="revpairs" format="input" label="${tool.name} on ${on_string}: Dir2 trimmed pairs">
146 <filter>(paired['is_paired'])</filter> 146 <filter>(paired['is_paired'])</filter>
147 </data> 147 </data>
148 <data name="singles" format="fastq" label="${tool.name} on ${on_string}: trimmed reads"/> 148 <data name="singles" format="input" label="${tool.name} on ${on_string}: trimmed reads"/>
149 <data name="dummy_out" format="tabular" label="${tool.name} on ${on_string}: DEBUG OUTPUT" hidden="True"/> 149 <data name="dummy_out" format="tabular" label="${tool.name} on ${on_string}: DEBUG OUTPUT" hidden="True"/>
150 </outputs> 150 </outputs>
151 151
152 <stdio> 152 <stdio>
153 <exit_code range="1:" level="fatal" description="Trimmomatic error" /> 153 <exit_code range="1:" level="fatal" description="Trimmomatic error" />