Mercurial > repos > simon-gladman > trimmomatic_032

comparison trimmomatic.xml @ 9:2c4e0eab2cae draft

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Uploaded
author simon-gladman
date Thu, 10 Jul 2014 13:30:31 -0400
parents 76d1aebc44bf
children 70953ccd575a
comparison
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8:18bd222a110e 9:2c4e0eab2cae
16 revfile ${paired.reverse_file} 16 revfile ${paired.reverse_file}
17 #end if 17 #end if
18 #if $paired.is_paired == "collection": 18 #if $paired.is_paired == "collection":
19 fwdfile ${collection_data.forward} 19 fwdfile ${collection_data.forward}
20 revfile ${collection_data.reverse} 20 revfile ${collection_data.reverse}
21 #end if
21 phred $phred 22 phred $phred
22 cutadapt ${adapt.adapters} 23 cutadapt ${adapt.adapters}
23 #if $adapt.adapters: 24 #if $adapt.adapters:
24 adaptfile ${adapt.adapt_file} 25 adaptfile ${adapt.adapt_file}
25 adaptseed ${adapt.adapt_seed} 26 adaptseed ${adapt.adapt_seed}