Mercurial > repos > simon-gladman > row_means

comparison row_means.xml @ 0:33493e25c51c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Row means initial upload
author simon-gladman
date Tue, 13 Nov 2018 20:31:41 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:33493e25c51c
1 <tool id='row_means' name='Row Means' version="0.1">
2 <description>Calculates the mean of a row of numbers for an entire table</description>
3 <version_command><![CDATA[
4 python '${__tool_directory__}/means_by_row.py --version'
5 ]]></version_command>
6 <command detect_errors="exit_code"><![CDATA[
7 python '${__tool_directory__}/means_by_row.py'
8 --infile '$input_table'
9 --outfile '$outfile'
10 --skip $skip_rows
11 ]]>
12 </command>
13 <inputs>
14 <param format="tabular" name="input_table" type="data" label="Input Table" help="Input tab delimited numeric table for which row means will be calculated"/>
15 <param type="integer" name="skip_rows" value="0" label="Number of header rows to skip" help="Skip this number of header rows in case they are header labels etc." />
16 </inputs>
17 <outputs>
18 <data format="tabular" name="outfile"/>
19 </outputs>
20 <tests>
21 <test>
22 <param name='input_table' value='input.txt' />
23 <output name='outfile' file='output.txt' />
24 </test>
25 <test>
26 <param name='input_table' value='input.txt' />
27 <param name='skip_rows' value="3" />
28 <output name='outfile' file='skip_out.txt' />
29 </test>
30 </tests>
31 <help><![CDATA[
32 This tool outputs a list with the mean values of the rows of a numeric input table.
33
34 It takes a tabular input of numeric data and can skip header rows if required.
35
36 Non-numeric data or blanks are skipped and not included in mean calculations.
37 ]]>
38 </help>
39 <citations>
40 <citation type="bibtex">
41 @UNPUBLISHED{Gladman2018,
42 author = {Simon Gladman and Mike Thang},
43 title = {Row Mean: Calculates the mean of a row of numbers for an entire table},
44 year = {2018},
45 url = {https://github.com/gvlproject/galaxy-tools},
46 }
47 </citation>
48 </citations>
49 </tool>