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comparison test-data/GP_SAMPLE_TABLE.txt @ 0:ae9cd53b7760 draft

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author simon-gladman
date Wed, 05 Sep 2018 02:07:22 -0400
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1 X.SampleID Primer Final_Barcode Barcode_truncated_plus_T Barcode_full_length SampleType Description
2 CL3 CL3 ILBC_01 AACGCA TGCGTT CTAGCGTGCGT Soil Calhoun South Carolina Pine soil, pH 4.9
3 CC1 CC1 ILBC_02 AACTCG CGAGTT CATCGACGAGT Soil Cedar Creek Minnesota, grassland, pH 6.1
4 SV1 SV1 ILBC_03 AACTGT ACAGTT GTACGCACAGT Soil Sevilleta new Mexico, desert scrub, pH 8.3
5 M31Fcsw M31Fcsw ILBC_04 AAGAGA TCTCTT TCGACATCTCT Feces M3, Day 1, fecal swab, whole body study
6 M11Fcsw M11Fcsw ILBC_05 AAGCTG CAGCTT CGACTGCAGCT Feces M1, Day 1, fecal swab, whole body study
7 M31Plmr M31Plmr ILBC_07 AATCGT ACGATT CGAGTCACGAT Skin M3, Day 1, right palm, whole body study
8 M11Plmr M11Plmr ILBC_08 ACACAC GTGTGT GCCATAGTGTG Skin M1, Day 1, right palm, whole body study
9 F21Plmr F21Plmr ILBC_09 ACACAT ATGTGT GTAGACATGTG Skin F1, Day 1, right palm, whole body study
10 M31Tong M31Tong ILBC_10 ACACGA TCGTGT TGTGGCTCGTG Tongue M3, Day 1, tongue, whole body study
11 M11Tong M11Tong ILBC_11 ACACGG CCGTGT TAGACACCGTG Tongue M1, Day 1, tongue, whole body study
12 LMEpi24M LMEpi24M ILBC_13 ACACTG CAGTGT CATGAACAGTG Freshwater Lake Mendota Minnesota, 24 meter epilimnion
13 SLEpi20M SLEpi20M ILBC_15 ACAGAG CTCTGT AGCCGACTCTG Freshwater Sparkling Lake Wisconsin, 20 meter eplimnion
14 AQC1cm AQC1cm ILBC_16 ACAGCA TGCTGT GACCACTGCTG Freshwater (creek) Allequash Creek, 0-1cm depth
15 AQC4cm AQC4cm ILBC_17 ACAGCT AGCTGT CAAGCTAGCTG Freshwater (creek) Allequash Creek, 3-4 cm depth
16 AQC7cm AQC7cm ILBC_18 ACAGTG CACTGT ATGAAGCACTG Freshwater (creek) Allequash Creek, 6-7 cm depth
17 NP2 NP2 ILBC_19 ACAGTT AACTGT TCGCGCAACTG Ocean Newport Pier, CA surface water, Time 1
18 NP3 NP3 ILBC_20 ACATCA TGATGT GCTAAGTGATG Ocean Newport Pier, CA surface water, Time 2
19 NP5 NP5 ILBC_21 ACATGA TCATGT GAACGATCATG Ocean Newport Pier, CA surface water, Time 3
20 TRRsed1 TRRsed1 ILBC_22 ACATGT ACATGT CACGTGACATG Sediment (estuary) Tijuana River Reserve, depth 1
21 TRRsed2 TRRsed2 ILBC_23 ACATTC GAATGT TGCGCTGAATG Sediment (estuary) Tijuana River Reserve, depth 2
22 TRRsed3 TRRsed3 ILBC_24 ACCACA TGTGGT GATGTATGTGG Sediment (estuary) Tijuana River Reserve, depth 2
23 TS28 TS28 ILBC_25 ACCAGA TCTGGT GCATCGTCTGG Feces Twin #1
24 TS29 TS29 ILBC_26 ACCAGC GCTGGT CTAGTCGCTGG Feces Twin #2
25 Even1 Even1 ILBC_27 ACCGCA TGCGGT TGACTCTGCGG Mock Even1
26 Even2 Even2 ILBC_28 ACCTCG CGAGGT TCTGATCGAGG Mock Even2
27 Even3 Even3 ILBC_29 ACCTGT ACAGGT AGAGAGACAGG Mock Even3