Mercurial > repos > simon-gladman > barrnap

diff tool_dependencies.xml @ 6:409688c460e0

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Changed version of barrnap to 0.3 and used IUC's package.
author slugger70@gmail.com
date Tue, 26 Aug 2014 16:43:56 +1000
parents 2c8ee9dc1fcc
children 54317fa6c477
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 03 00:08:18 2013 -0400
+++ b/tool_dependencies.xml	Tue Aug 26 16:43:56 2014 +1000
@@ -1,18 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="package_barrnap_0_1" version="0.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://www.vicbioinformatics.com/barrnap-0.1.tar.gz</action>
-                <action type="move_directory_files">
-                    <source_directory>.</source_directory>
-                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/barrnap</action>
-            </actions>
-        </install>
+    <package name="package_barrnap_0_3" version="0.3">
+        <repository name="package_barrnap_0_3" />
     </package>
 </tool_dependency>