Mercurial > repos > saketkc > transfic_web

diff transFIC_web/test-data/condel_output.csv @ 3:4051693fb690 draft

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author saketkc
date Mon, 14 Apr 2014 21:36:51 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/transFIC_web/test-data/condel_output.csv	Mon Apr 14 21:36:51 2014 -0400
@@ -0,0 +1,26 @@
+#id	location	allele	gene	hgnc	hgncdesc	transcript	ensp	sw	protein_position	amino_acids	uploaded_variation	cdna_position	cds_position	codons	existing_variation	sift	polyphen	mass	condel	condelLabel
+19	7:38471790	A	ENSG00000078053	AMPH	amphiphysin	ENST00000428293	ENSP00000390734	NA	386	T/M	7_38471790_A	1226	1157	aCg/aTg	COSM53413	0.01	0.998	NA	0.880	deleterious
+17	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000447717	ENSP00000402803	NA	82	L/R	7_43918688_C	762	245	cTc/cGc	COSM53414	0.05	0.995	NA	0.803	deleterious
+18	6:88372821	A	ENSG00000135336	ORC3	origin recognition complex, subunit 3	ENST00000546266	ENSP00000444695	NA	455	A/T	6_88372821_A	1720	1363	Gcc/Acc	COSM53412	0.01	0.93	NA	0.782	deleterious
+15	6:88372821	A	ENSG00000135336	ORC3	origin recognition complex, subunit 3	ENST00000392844	ENSP00000376586	ORC3_HUMAN	598	A/T	6_88372821_A	1840	1792	Gcc/Acc	COSM53412	0.01	0.93	1.95	0.782	deleterious
+16	6:88372821	A	ENSG00000135336	ORC3	origin recognition complex, subunit 3	ENST00000452292	ENSP00000411130	NA	536	A/T	6_88372821_A	1615	1606	Gcc/Acc	COSM53412	0.01	0.266	NA	0.032	neutral
+13	5:41934236	G	ENSG00000151876	FBXO4	F-box protein 4	ENST00000509134	ENSP00000421749	NA	242	K/E	5_41934236_G	733	724	Aag/Gag	COSM53411	0.68	0.01	NA	0.001	neutral
+14	5:41934236	G	ENSG00000151876	FBXO4	F-box protein 4	ENST00000281623	ENSP00000281623	FBX4_HUMAN	242	K/E	5_41934236_G	780	724	Aag/Gag	COSM53411	0.76	0.001	0	0.000	neutral
+11	9:32473058	A	ENSG00000107201	DDX58	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	ENST00000379882	ENSP00000369212	NA	598	L/F	9_32473058_A	1952	1794	ttA/ttT	COSM53415	0.01	0.96	NA	0.808	deleterious
+12	5:41934236	G	ENSG00000151876	FBXO4	F-box protein 4	ENST00000296812	ENSP00000296812	NA	242	K/E	5_41934236_G	780	724	Aag/Gag	COSM53411	0.67	0.01	NA	0.001	neutral
+21	7:38471790	A	ENSG00000078053	AMPH	amphiphysin	ENST00000353242	ENSP00000342268	NA	156	T/M	7_38471790_A	1226	467	aCg/aTg	COSM53413	0	0.983	NA	0.929	deleterious
+20	7:38471790	A	ENSG00000078053	AMPH	amphiphysin	ENST00000356264	ENSP00000348602	AMPH_HUMAN	386	T/M	7_38471790_A	1373	1157	aCg/aTg	COSM53413	0.01	0.998	1.79	0.880	deleterious
+22	6:88372821	A	ENSG00000135336	ORC3	origin recognition complex, subunit 3	ENST00000257789	ENSP00000257789	NA	599	A/T	6_88372821_A	1829	1795	Gcc/Acc	COSM53412	0.01	0.983	NA	0.835	deleterious
+23	7:38471790	A	ENSG00000078053	AMPH	amphiphysin	ENST00000325590	ENSP00000317441	NA	386	T/M	7_38471790_A	1226	1157	aCg/aTg	COSM53413	0.02	0.998	NA	0.857	deleterious
+24	7:38471790	A	ENSG00000078053	AMPH	amphiphysin	ENST00000441628	ENSP00000415085	NA	137	T/M	7_38471790_A	408	410	aCg/aTg	COSM53413	0	0.983	NA	0.929	deleterious
+3	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000223341	ENSP00000223341	NA	82	L/R	7_43918688_C	622	245	cTc/cGc	COSM53414	0.05	0.995	NA	0.803	deleterious
+2	9:32473058	A	ENSG00000107201	DDX58	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	ENST00000545044	ENSP00000443055	NA	440	L/F	9_32473058_A	1810	1320	ttA/ttT	COSM53415	0	0.918	NA	0.869	deleterious
+10	9:32473058	A	ENSG00000107201	DDX58	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	ENST00000379883	ENSP00000369213	DDX58_HUMAN	643	L/F	9_32473058_A	2087	1929	ttA/ttT	COSM53415	0.01	0.96	3.78	0.808	deleterious
+1	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000402306	ENSP00000384955	NA	116	L/R	7_43918688_C	387	347	cTc/cGc	COSM53414	0.05	0.995	NA	0.803	deleterious
+0	9:32473058	A	ENSG00000107201	DDX58	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	ENST00000542096	ENSP00000442160	NA	572	L/F	9_32473058_A	2292	1716	ttA/ttT	COSM53415	0.01	0.96	NA	0.808	deleterious
+7	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000453200	ENSP00000396918	URGCP_HUMAN	125	L/R	7_43918688_C	868	374	cTc/cGc	COSM53414	0.05	0.995	2.545	0.803	deleterious
+6	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000443736	ENSP00000392136	NA	82	L/R	7_43918688_C	420	245	cTc/cGc	COSM53414	0.05	0.995	NA	0.803	deleterious
+5	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000455877	ENSP00000392963	NA	82	L/R	7_43918688_C	469	245	cTc/cGc	COSM53414	0	0.995	NA	0.958	deleterious
+4	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000426198	ENSP00000389990	NA	82	L/R	7_43918688_C	640	245	cTc/cGc	COSM53414	0.09	0.995	NA	0.467	neutral
+9	9:32473058	A	ENSG00000107201	DDX58	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	ENST00000379868	ENSP00000369197	NA	440	L/F	9_32473058_A	1823	1320	ttA/ttT	COSM53415	0.01	0.96	NA	0.808	deleterious
+8	7:43918688	C	ENSG00000106608	URGCP	upregulator of cell proliferation	ENST00000336086	ENSP00000336872	NA	82	L/R	7_43918688_C	2482	245	cTc/cGc	COSM53414	0.05	0.995	NA	0.803	deleterious