|
0
|
1 <?xml version='1.0' encoding='utf-8'?>
|
|
|
2 <tool_dependency>
|
|
1
|
3 <package name="pyvcf" version="0.6.7">
|
|
0
|
4 <readme>
|
|
|
5 This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF)
|
|
|
6 package.
|
|
|
7
|
|
|
8 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
|
|
|
9
|
|
|
10 Developmental version is hosted on Github: https://github.com/saketkc/galaxy_tools/packages/package_pyvcf_0_6_7/
|
|
|
11 </readme>
|
|
|
12 <install version="1.0">
|
|
|
13 <actions>
|
|
|
14 <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action>
|
|
|
15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
|
|
|
16 <action type="shell_command">
|
|
|
17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
|
|
|
18 python setup.py install --install-lib $INSTALL_DIR/lib/python
|
|
|
19 </action>
|
|
|
20 <action type="set_environment">
|
|
|
21 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
|
|
|
22 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
|
|
|
23 </action>
|
|
|
24 </actions>
|
|
|
25 </install>
|
|
|
26 </package>
|
|
|
27 </tool_dependency>
|
|
|
28
|
|
|
29
|
|
|
30
|
|
|
31
|
