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comparison tools/chasm/chasm_web.xml @ 4:8aceb7fc57f5

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add tool dependecies
author Saket Choudhary <saketkc@gmail.com>
date Fri, 01 Nov 2013 06:01:52 +0530
parents 89407d4da3ca
children
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3:89407d4da3ca 4:8aceb7fc57f5
1 <tool id="chasm_webservice" name="CHASM Webservice" version="1.0.0" hidden="false"> 1 <tool id="chasm_webservice" name="CHASM Webservice" version="1.0.0" hidden="false">
2 <requirements> 2 <requirements>
3 <requirement type="python-module">requests</requirement> 3 <requirement type="package" version="2.0.1">requests</requirement>
4 <requirement type="python-module">xlrd</requirement>
5 </requirements> 4 </requirements>
6 <description>CHASM score using CRAVAT webservice</description> 5 <description>CHASM score using CRAVAT webservice</description>
7 <command interpreter="python"> 6 <command interpreter="python">
8 chasm_web.py --path $input --analysis_type $analysis_type --cancertype $tissue_type --email $__user_email__ --gene_analysis_out $gene_analysis_out --variant_analysis_out $variant_analysis_out --amino_acid_level_analysis_out $amino_acid_level_analysis_out --error_file $error_file 7 chasm_web.py --path $input --analysis_type $analysis_type --cancertype $tissue_type --email $__user_email__ --gene_analysis_out $gene_analysis_out --variant_analysis_out $variant_analysis_out --amino_acid_level_analysis_out $amino_acid_level_analysis_out --error_file $error_file
9 </command> 8 </command>