# HG changeset patch
# User rv43
# Date 1650391990 0
# Node ID 51dc93d0806ac167b051ad5907d8db47dc20f6f7
# Parent  7ffde31e1e0761af8ed95e30c53b96309335b780
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 87acf8a257d5d51cf249de085e555bb11d1dbd88"

diff -r 7ffde31e1e07 -r 51dc93d0806a tomo.py
--- a/tomo.py	Tue Apr 19 18:03:03 2022 +0000
+++ b/tomo.py	Tue Apr 19 18:13:10 2022 +0000
@@ -1147,7 +1147,7 @@
         recon_sinogram = spi.gaussian_filter(recon_sinogram, 0.5)
         recon_clean = np.expand_dims(recon_sinogram, axis=0)
         del recon_sinogram
-        logging.info('tomopy.misc.corr.remove_ring start')
+        logging.info(f'tomopy.misc.corr.remove_ring start on {num_core} cores')
         recon_clean = tomopy.misc.corr.remove_ring(recon_clean, rwidth=17, ncore=num_core)
         logging.info('tomopy.misc.corr.remove_ring end')
         logging.debug(f'filtering and removing ring artifact took {time()-t0:.2f} seconds!')
@@ -1185,9 +1185,12 @@
         center = sinogram.shape[1]/2
 
         # try automatic center finding routines for initial value
-        logging.info('tomopy.find_center_vo start')
-        #tomo_center = tomopy.find_center_vo(sinogram, ncore=num_core)
-        tomo_center = tomopy.find_center_vo(sinogram, ncore=1)
+        if num_core > 24:
+            logging.info('tomopy.find_center_vo start on 24 cores')
+            tomo_center = tomopy.find_center_vo(sinogram, ncore=24)
+        else:
+            logging.info(f'tomopy.find_center_vo start on {num_core} cores')
+            tomo_center = tomopy.find_center_vo(sinogram, ncore=num_core)
         logging.info('tomopy.find_center_vo end')
         center_offset_vo = tomo_center-center
         if self.test_mode: