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planemo upload for repository https://github.com/rolfverberg/galaxytools commit b891edb4a5881959112ff276f7696bbc36dcea33
author rv43
date Fri, 10 Mar 2023 16:39:22 +0000
parents fba792d5f83b
children 1cf15b61cd83
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#!/bin/bash

# From workflow
python -m workflow run_tomo -i sobhani-3249-A.yaml -o sobhani-3249-A_reduce.nxs -n 48 -s 'only' --reduce_data

# As Galaxy tool:
#python tomo_reduce.py -i sobhani-3249-A.yaml -o sobhani-3249-A_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag --img_x_bounds 620 950
#python tomo_reduce.py -i tenstom_1304r-1_one_stack.yaml -o tenstom_1304r-1_one_stack_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag
#python tomo_reduce.py -i tenstom_1304r-1.yaml -o tenstom_1304r-1_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag #--img_x_bounds 713 1388