Mercurial > repos > rv43 > tomo
view read_image.py @ 49:26f99fdd8d61 draft
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
author | rv43 |
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date | Thu, 28 Jul 2022 16:05:24 +0000 |
parents | |
children | 97c4e2cbbad9 |
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#!/usr/bin/env python3 import logging import sys import argparse import numpy as np def __main__(): # Parse command line arguments parser = argparse.ArgumentParser( description='Read a reconstructed image') parser.add_argument('-i', '--input_image', help='Reconstructed image file') parser.add_argument('-l', '--log', type=argparse.FileType('w'), default=sys.stdout, help='Log file') args = parser.parse_args() # Set basic log configuration logging_format = '%(asctime)s : %(levelname)s - %(module)s : %(funcName)s - %(message)s' log_level = 'INFO' level = getattr(logging, log_level.upper(), None) if not isinstance(level, int): raise ValueError(f'Invalid log_level: {log_level}') logging.basicConfig(format=logging_format, level=level, force=True, handlers=[logging.StreamHandler()]) logging.info(f'input_image = {args.input_image}') logging.debug(f'log = {args.log}') logging.debug(f'is log stdout? {args.log is sys.stdout}') # Load image f = np.load(args.input_image) logging.info(f'f shape = {f.shape}') if __name__ == "__main__": __main__()