Mercurial > repos > rv43 > tomo
diff tomo_reduce.xml @ 69:fba792d5f83b draft
planemo upload for repository https://github.com/rolfverberg/galaxytools commit ab9f412c362a4ab986d00e21d5185cfcf82485c1
| author | rv43 |
|---|---|
| date | Fri, 10 Mar 2023 16:02:04 +0000 |
| parents | |
| children | d5329ca0210d |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tomo_reduce.xml Fri Mar 10 16:02:04 2023 +0000 @@ -0,0 +1,34 @@ +<tool id="tomo_reduce" name="Tomo Reduce" version="0.1.0" python_template_version="3.9"> + <description>Reduce tomography images</description> + <macros> + <import>tomo_macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="exit_code"> + <![CDATA[ + mkdir tomo_reduce_plots; + $__tool_directory__/tomo_reduce.py + --input_file '$input_file' + --output_file 'output.nxs' + --galaxy_flag + --img_x_bounds $x_bounds.x_bound_low $x_bounds.x_bound_upp + -l '$log' + ]]> + </command> + <inputs> + <param name="input_file" type="data" optional="false" label="Input file"/> + </inputs> + <outputs> + <expand macro="common_outputs"/> + <collection name="tomo_reduce_plots" type="list" label="Tomo data reduction images"> + <discover_datasets pattern="__name_and_ext__" directory="tomo_reduce_plots"/> + </collection> + <data name="output_file" format="nxs" label="Reduced tomography data" from_work_dir="output.nxs"/> + </outputs> + <help> + <![CDATA[ + Reduce tomography images. + ]]> + </help> + <expand macro="citations"/> +</tool>
