Mercurial > repos > rv43 > tomo

diff run_tomo_reduce @ 69:fba792d5f83b draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit ab9f412c362a4ab986d00e21d5185cfcf82485c1
author rv43
date Fri, 10 Mar 2023 16:02:04 +0000
parents
children 1cf15b61cd83
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/run_tomo_reduce	Fri Mar 10 16:02:04 2023 +0000
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+#!/bin/bash
+
+# From workflow
+python -m workflow run_tomo -i sobhani-3249-A.yaml -o sobhani-3249-A_reduce.nxs -n 48 -s 'only' --reduce_data
+
+# As Galaxy tool:
+#python tomo_reduce.py -i sobhani-3249-A.yaml -o sobhani-3249-A_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag --img_x_bounds 620 950
+#python tomo_reduce.py -i tenstom_1304r-1_one_stack.yaml -o tenstom_1304r-1_one_stack_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag
+#python tomo_reduce.py -i tenstom_1304r-1.yaml -o tenstom_1304r-1_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag #--img_x_bounds 713 1388