Mercurial > repos > rv43 > tomo
diff tomo.py @ 20:c033f8843dc0 draft
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 9ffb1cf41954e073c15a9b2a9ef7f3fd9b643cd0"
| author | rv43 |
|---|---|
| date | Mon, 18 Apr 2022 18:10:07 +0000 |
| parents | 4eba03628711 |
| children | 3caba2116858 |
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--- a/tomo.py Mon Apr 18 16:25:31 2022 +0000 +++ b/tomo.py Mon Apr 18 18:10:07 2022 +0000 @@ -1556,6 +1556,9 @@ logging.error('Illegal center_type_selector entry in galaxy_param '+ f'({center_type_selector})') galaxy_param['center_type_selector'] = None + logging.info(f'row_bounds = {row_bounds}') + logging.info(f'center_rows = {center_rows}') + logging.info(f'center_type_selector = {center_type_selector}') else: if galaxy_param: logging.warning('Ignoring galaxy_param in findCenters (only for Galaxy)') @@ -1716,6 +1719,7 @@ use_center = 'no' row = center_rows[0] if self.test_mode or self.galaxy_flag: + logging.info(f'row = {row} n1 = {n1} n2 = {n2}') assert(msnc.is_int(row, n1, n2-2)) if msnc.is_int(row, n1, n2-2): if self.test_mode or self.galaxy_flag: @@ -1731,6 +1735,8 @@ if msnc.is_num(center_offset): use_center = pyip.inputYesNo('Current lower center offset = '+ f'{center_offset}, use this value ([y]/n)? ', blank=True) + logging.info(f'use_center = {use_center}') + logging.info(f'use_row = {use_row}') if use_center == 'no': if use_row == 'no': if not self.test_mode: @@ -1747,7 +1753,6 @@ eff_pixel_size, cross_sectional_dim, num_core=num_core, galaxy_param=galaxy_param) logging.info(f'lower_center_offset = {center_offset:.2f} {type(center_offset)}') - print(center_offset) # Update config and save to file find_center['row_bounds'] = [n1, n2] @@ -1761,6 +1766,7 @@ use_center = 'no' row = center_rows[1] if self.test_mode or self.galaxy_flag: + logging.info(f'row = {row} lower_row = {lower_row} n2 = {n2}') assert(msnc.is_int(row, lower_row+1, n2-1)) if msnc.is_int(row, lower_row+1, n2-1): if self.test_mode or self.galaxy_flag: