--- a/tomo_setup.xml	Thu Mar 31 18:24:16 2022 +0000
+++ b/tomo_setup.xml	Thu Mar 31 20:48:17 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="tomo_setup" name="Tomo Setup" version="0.1.0" python_template_version="3.9">
+<tool id="tomo_setup" name="Tomo Setup" version="0.1.1" python_template_version="3.9">
     <description>Preprocess tomography images</description>
     <requirements>
         <requirement type="package" version="1.11.0">tomopy</requirement>
@@ -14,7 +14,7 @@
         --bright 'bright_field.png'
         --tomo 'tomo.png'
         --detectorbounds 'detectorbounds.png'
-        --output_data '$output_data'
+        --output_data 'output.npz'
         --output_config 'output_config.yaml'
         -l '$log'
 #for $s in $tomo_sets# ${s.offset} ${s.num} #end for
@@ -47,7 +47,7 @@
         <data name="bright_field" format="png" label="Bright field" from_work_dir="bright_field.png"/>
         <data name="tomo" format="png" label="First tomography image" from_work_dir="tomo.png"/>
         <data name="detectorbounds" format="png" label="Detector bounds" from_work_dir="detectorbounds.png"/>
-        <data name="output_data" format="npz" label="Preprocessed tomography data"/>
+        <data name="output_data" format="npz" label="Preprocessed tomography data" from_work_dir="output_data.npz"/>
         <data name="output_config" format="yaml" label="Output config" from_work_dir="output_config.yaml"/>
         <data name="log" format="txt" label="Log"/>
     </outputs>