Mercurial > repos > rv43 > tomo
diff tomo_reconstruct.xml @ 7:845270a96464 draft
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit a08ed1264ea7b7c878ba96801e4b27ef621fb6be"
author | rv43 |
---|---|
date | Thu, 07 Apr 2022 21:09:58 +0000 |
parents | f9c52762c32c |
children | 1bcca1f2adb4 |
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--- a/tomo_reconstruct.xml Wed Apr 06 19:48:22 2022 +0000 +++ b/tomo_reconstruct.xml Thu Apr 07 21:09:58 2022 +0000 @@ -1,9 +1,9 @@ <tool id="tomo_reconstruct" name="Tomo Reconstruction" version="0.1.0" python_template_version="3.9"> <description>Perform a tomography reconstruction</description> - <requirements> - <requirement type="package" version="1.11.0">tomopy</requirement> - <requirement type="package" version="3.6.0">h5py</requirement> - </requirements> + <macros> + <import>tomo_macros.xml</import> + </macros> + <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ $__tool_directory__/tomo_reconstruct.py -i '$red_stacks' @@ -13,24 +13,15 @@ -l '$log' ]]></command> <inputs> + <expand macro="common_inputs"/> <param name="red_stacks" type='data' format='npz' optional='false' label="Reduced stacks"/> - <param name="config" type='data' format='yaml' optional='false' label="Input config"/> </inputs> <outputs> + <expand macro="common_outputs"/> <data name="output_data" format="npz" label="Reconstructed tomography stacks" from_work_dir="output_data.npz"/> - <data name="output_config" format="yaml" label="Output config" from_work_dir="output_config.yaml"/> - <data name="log" format="txt" label="Log"/> </outputs> <help><![CDATA[ Reconstruct tomography images. ]]></help> - <citations> - <citation type="bibtex"> -@misc{githubsum_files, - author = {Verberg, Rolf}, - year = {2022}, - title = {Tomo Reconstruction}, -}</citation> - </citations> - + <expand macro="citations"/> </tool>