Mercurial > repos > rv43 > tomo
diff tomo_find_center.py @ 13:40395e60d2be draft
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit e61a62f5b5950b3142fedad2c0e49a00f66f9980"
author | rv43 |
---|---|
date | Fri, 08 Apr 2022 17:49:28 +0000 |
parents | 845270a96464 |
children | 1bcca1f2adb4 |
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--- a/tomo_find_center.py Fri Apr 08 16:56:53 2022 +0000 +++ b/tomo_find_center.py Fri Apr 08 17:49:28 2022 +0000 @@ -30,10 +30,6 @@ type=float, help='Set step') parser.add_argument('--output_config', required=True, help='Output config') - parser.add_argument('--recon_center_low', - help='Lower reconstructed slice center image name') - parser.add_argument('--recon_center_upp', - help='Upper reconstructed slice center image name') parser.add_argument('-l', '--log', type=argparse.FileType('w'), default=sys.stdout, help='Log file') args = parser.parse_args() @@ -56,8 +52,6 @@ logging.debug(f'set_range = {args.set_range}') logging.debug(f'set_step = {args.set_step}') logging.debug(f'output_config = {args.output_config}') - logging.debug(f'recon_center_low = {args.recon_center_low}') - logging.debug(f'recon_center_upp = {args.recon_center_upp}') logging.debug(f'log = {args.log}') logging.debug(f'is log stdout? {args.log is sys.stdout}') @@ -74,8 +68,7 @@ # Find centers galaxy_param = {'row_bounds' : args.row_bounds, 'center_rows' : args.center_rows, 'center_type_selector' : args.center_type_selector, 'set_center' : args.set_center, - 'set_range' : args.set_range, 'set_step' : args.set_step, - 'recon_center_low' : args.recon_center_low, 'recon_center_upp' : args.recon_center_upp} + 'set_range' : args.set_range, 'set_step' : args.set_step} tomo.findCenters(galaxy_param) if __name__ == "__main__":