Mercurial > repos > rv43 > tomo

diff tomo_find_center.py @ 71:1cf15b61cd83 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit 366e516aef0735af2998c6ff3af037181c8d5213
author rv43
date Mon, 20 Mar 2023 13:56:57 +0000
parents fba792d5f83b
children d5e1d4ea2b7e
line wrap: on
line diff
--- a/tomo_find_center.py	Fri Mar 10 16:39:22 2023 +0000
+++ b/tomo_find_center.py	Mon Mar 20 13:56:57 2023 +0000
@@ -24,7 +24,6 @@
             type=pathlib.Path,
             help='''Full or relative path to the output file (in yaml format).''')
     parser.add_argument('--center_rows',
-            required=True,
             nargs=2,
             type=int,
             help='''Center finding rows.''')
@@ -81,7 +80,7 @@
     data = tomo.read(args.input_file)
 
     # Find the calibrated center axis info
-    data = tomo.find_centers(data, center_rows=tuple(args.center_rows))
+    data = tomo.find_centers(data, center_rows=args.center_rows)
 
     # Write output file
     data = tomo.write(data, args.output_file)