Mercurial > repos > rv43 > tomo

diff run_tomo_reduce @ 71:1cf15b61cd83 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit 366e516aef0735af2998c6ff3af037181c8d5213
author rv43
date Mon, 20 Mar 2023 13:56:57 +0000
parents fba792d5f83b
children
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--- a/run_tomo_reduce	Fri Mar 10 16:39:22 2023 +0000
+++ b/run_tomo_reduce	Mon Mar 20 13:56:57 2023 +0000
@@ -1,9 +1,11 @@
 #!/bin/bash
 
 # From workflow
-python -m workflow run_tomo -i sobhani-3249-A.yaml -o sobhani-3249-A_reduce.nxs -n 48 -s 'only' --reduce_data
+#python -m workflow run_tomo -i sobhani-3249-A.yaml -o sobhani-3249-A_reduce.nxs -n 48 -s 'only' --reduce_data
+#python -m workflow run_tomo -i tenstom_1304r-1_one_stack.yaml -o tenstom_1304r-1_one_stack_reduce.nxs -n 48 -s 'only' --reduce_data
+#python -m workflow run_tomo -i tenstom_1304r-1.yaml -o tenstom_1304r-1_reduce.nxs -n 48 -s 'only' --reduce_data
 
 # As Galaxy tool:
-#python tomo_reduce.py -i sobhani-3249-A.yaml -o sobhani-3249-A_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag --img_x_bounds 620 950
-#python tomo_reduce.py -i tenstom_1304r-1_one_stack.yaml -o tenstom_1304r-1_one_stack_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag
-#python tomo_reduce.py -i tenstom_1304r-1.yaml -o tenstom_1304r-1_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag #--img_x_bounds 713 1388
+python tomo_reduce.py -i sobhani-3249-A_start.nxs -o sobhani-3249-A_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag --img_x_bounds 620 950
+python tomo_reduce.py -i tenstom_1304r-1_one_stack_start.nxs -o tenstom_1304r-1_one_stack_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag #--img_x_bounds 582 1509
+python tomo_reduce.py -i tenstom_1304r-1_start.nxs -o tenstom_1304r-1_reduce.nxs --log_level INFO -l tomo.log --galaxy_flag #--img_x_bounds 713 1388