Mercurial > repos > rv43 > tomo
comparison fit.py @ 65:f31ef7bfb430 draft
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit d55db09b45d0b542f966cef17892858bb55d94f7"
author | rv43 |
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date | Thu, 18 Aug 2022 14:57:39 +0000 |
parents | 15288e9746e0 |
children | fba792d5f83b |
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64:15288e9746e0 | 65:f31ef7bfb430 |
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6 | 6 |
7 @author: rv43 | 7 @author: rv43 |
8 """ | 8 """ |
9 | 9 |
10 import sys | 10 import sys |
11 import re | |
11 import logging | 12 import logging |
12 import numpy as np | 13 import numpy as np |
13 | 14 |
14 from asteval import Interpreter | 15 from asteval import Interpreter |
15 from copy import deepcopy | 16 from copy import deepcopy |
16 #from lmfit import Minimizer | 17 #from lmfit import Minimizer |
17 from lmfit import Model, Parameters | 18 from lmfit import Model, Parameters |
18 from lmfit.models import ConstantModel, LinearModel, QuadraticModel, PolynomialModel,\ | 19 from lmfit.models import ConstantModel, LinearModel, QuadraticModel, PolynomialModel,\ |
19 StepModel, RectangleModel, GaussianModel, LorentzianModel | 20 StepModel, RectangleModel, GaussianModel, LorentzianModel |
20 | 21 |
21 from general import * | 22 from general import is_index, index_nearest, quickPlot |
22 | 23 |
23 # sigma = fwhm_factor*fwhm | 24 # sigma = fwhm_factor*fwhm |
24 fwhm_factor = { | 25 fwhm_factor = { |
25 'gaussian' : f'fwhm/(2*sqrt(2*log(2)))', | 26 'gaussian' : f'fwhm/(2*sqrt(2*log(2)))', |
26 'lorentzian' : f'0.5*fwhm', | 27 'lorentzian' : f'0.5*fwhm', |