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comparison tomo_reconstruct.xml @ 41:ef5c2f7b49ec draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 0d207c80e38a6019595ebe178f5678372b75f3e7"
author rv43
date Thu, 21 Apr 2022 14:21:38 +0000
parents 3caba2116858
children 059819ea1f0e
comparison
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40:fa94fe25ca46 41:ef5c2f7b49ec
1 <tool id="tomo_reconstruct" name="Tomo Reconstruction" version="0.1.0" python_template_version="3.9"> 1 <tool id="tomo_reconstruct" name="Tomo Reconstruction" version="0.1.1" python_template_version="3.9">
2 <description>Perform a tomography reconstruction</description> 2 <description>Perform a tomography reconstruction</description>
3 <macros> 3 <macros>
4 <import>tomo_macros.xml</import> 4 <import>tomo_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
26 <expand macro="common_outputs"/> 26 <expand macro="common_outputs"/>
27 <data name="output_data" format="npz" label="Reconstructed tomography stacks" from_work_dir="output_data.npz"/> 27 <data name="output_data" format="npz" label="Reconstructed tomography stacks" from_work_dir="output_data.npz"/>
28 <collection name="recon_slices" type="list" label="Recontructed slices midway in each dimension"> 28 <collection name="recon_slices" type="list" label="Recontructed slices midway in each dimension">
29 <discover_datasets pattern="__name_and_ext__" directory="center_slice_pngs"/> 29 <discover_datasets pattern="__name_and_ext__" directory="center_slice_pngs"/>
30 </collection> 30 </collection>
31 <data name="output_config" format="yaml" label="Output config reconstruction" from_work_dir="output_config.yaml"/>
31 </outputs> 32 </outputs>
32 <help><![CDATA[ 33 <help><![CDATA[
33 Reconstruct tomography images. 34 Reconstruct tomography images.
34 ]]></help> 35 ]]></help>
35 <expand macro="citations"/> 36 <expand macro="citations"/>