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comparison tomo_setup.py @ 2:b8977c98800b draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 0c40fb274acc13ebf7054379bb49ed13acec918e"
author rv43
date Thu, 31 Mar 2022 20:48:17 +0000
parents cb1b0d757704
children 1bcca1f2adb4
comparison
equal deleted inserted replaced
1:e4778148df6b 2:b8977c98800b
50 if not isinstance(level, int): 50 if not isinstance(level, int):
51 raise ValueError(f'Invalid log_level: {log_level}') 51 raise ValueError(f'Invalid log_level: {log_level}')
52 logging.basicConfig(format=logging_format, level=level, force=True, 52 logging.basicConfig(format=logging_format, level=level, force=True,
53 handlers=[logging.StreamHandler()]) 53 handlers=[logging.StreamHandler()])
54 54
55 logging.info(f'config = {args.config}') 55 logging.debug(f'config = {args.config}')
56 logging.info(f'theta_range = {args.theta_range.split()}') 56 logging.debug(f'theta_range = {args.theta_range.split()}')
57 logging.info(f'dark = {args.dark}') 57 logging.debug(f'dark = {args.dark}')
58 logging.info(f'bright = {args.bright}') 58 logging.debug(f'bright = {args.bright}')
59 logging.info(f'tomo = {args.tomo}') 59 logging.debug(f'tomo = {args.tomo}')
60 logging.info(f'detectorbounds = {args.detectorbounds}') 60 logging.debug(f'detectorbounds = {args.detectorbounds}')
61 logging.info(f'output_config = {args.output_config}') 61 logging.debug(f'output_config = {args.output_config}')
62 logging.info(f'output_data = {args.output_data}') 62 logging.debug(f'output_data = {args.output_data}')
63 logging.info(f'log = {args.log}') 63 logging.debug(f'log = {args.log}')
64 logging.info(f'is log stdout? {args.log is sys.stdout}') 64 logging.debug(f'is log stdout? {args.log is sys.stdout}')
65 logging.info(f'tomoranges = {args.tomo_ranges}') 65 logging.debug(f'tomoranges = {args.tomo_ranges}')
66 66
67 # Read input files and collect data files info 67 # Read input files and collect data files info
68 datasets = [] 68 datasets = []
69 with open(args.inputfiles) as cf: 69 with open(args.inputfiles) as cf:
70 for line in cf: 70 for line in cf: