Mercurial > repos > rv43 > tomo

comparison tomo.py @ 18:b0a816c8f66c draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 1743a2a14a40c3a9ea949c36dc53e5d448646e19-dirty"
author rv43
date Mon, 18 Apr 2022 15:13:20 +0000
parents 7f723407beb3
children 4eba03628711
comparison
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17:7f723407beb3 18:b0a816c8f66c
1509 t0 = time() 1509 t0 = time()
1510 output_name = galaxy_param['output_name'] 1510 output_name = galaxy_param['output_name']
1511 logging.info(f'Saving preprocessed tomography stack to {output_name} ...') 1511 logging.info(f'Saving preprocessed tomography stack to {output_name} ...')
1512 save_stacks = {f'set_{stack["index"]}':tomo_stack 1512 save_stacks = {f'set_{stack["index"]}':tomo_stack
1513 for stack,tomo_stack in zip(stacks,self.tomo_stacks)} 1513 for stack,tomo_stack in zip(stacks,self.tomo_stacks)}
1514 logging.info(f'output_name = {output_name}')
1515 logging.info(f'save_stacks = {save_stacks}')
1514 np.savez(output_name, **save_stacks) 1516 np.savez(output_name, **save_stacks)
1515 logging.info(f'... done in {time()-t0:.2f} seconds!') 1517 logging.info(f'... done in {time()-t0:.2f} seconds!')
1516 1518
1517 del available_stacks 1519 del available_stacks
1518 1520