Mercurial > repos > rv43 > tomo

comparison tomo_reduce.py @ 70:97c4e2cbbad9 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit b891edb4a5881959112ff276f7696bbc36dcea33
author rv43
date Fri, 10 Mar 2023 16:39:22 +0000
parents fba792d5f83b
children 1cf15b61cd83
comparison
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69:fba792d5f83b 70:97c4e2cbbad9
16 parser = argparse.ArgumentParser( 16 parser = argparse.ArgumentParser(
17 description='Reduce tomography data') 17 description='Reduce tomography data')
18 parser.add_argument('-i', '--input_file', 18 parser.add_argument('-i', '--input_file',
19 required=True, 19 required=True,
20 type=pathlib.Path, 20 type=pathlib.Path,
21 help='''Full or relative path to the input file (in yaml format).''') 21 help='''Full or relative path to the input file (in yaml or nxs format).''')
22 parser.add_argument('-o', '--output_file', 22 parser.add_argument('-o', '--output_file',
23 required=False, 23 required=False,
24 type=pathlib.Path, 24 type=pathlib.Path,
25 help='''Full or relative path to the output file (in Nexus format).''') 25 help='''Full or relative path to the output file (in Nexus format).''')
26 parser.add_argument('--galaxy_flag', 26 parser.add_argument('--galaxy_flag',