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comparison msnc_tools.py @ 7:845270a96464 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit a08ed1264ea7b7c878ba96801e4b27ef621fb6be"
author rv43
date Thu, 07 Apr 2022 21:09:58 +0000
parents baf9f5eef128
children ef5c2f7b49ec
comparison
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6:baf9f5eef128 7:845270a96464
617 617
618 # Ensure config file exists 618 # Ensure config file exists
619 if not os.path.isfile(config_file): 619 if not os.path.isfile(config_file):
620 logging.error(f'Unable to load {config_file}') 620 logging.error(f'Unable to load {config_file}')
621 return 621 return
622 print(f'\nLoading {config_file}\n') 622
623 623 # Load config file (for now for Galaxy, allow .dat extension)
624 # Load config file
625 self.suffix = os.path.splitext(config_file)[1] 624 self.suffix = os.path.splitext(config_file)[1]
626 if self.suffix == '.yml' or self.suffix == '.yaml' or self.suffix == '.dat': 625 if self.suffix == '.yml' or self.suffix == '.yaml' or self.suffix == '.dat':
627 with open(config_file, 'r') as f: 626 with open(config_file, 'r') as f:
628 self.config = yaml.safe_load(f) 627 self.config = yaml.safe_load(f)
629 elif self.suffix == '.txt': 628 elif self.suffix == '.txt':