Mercurial > repos > rv43 > tomo

comparison tomo_reconstruct.py @ 17:7f723407beb3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit d1744188635274aa3d0bb0e10fcb683602a23b59"
author rv43
date Fri, 15 Apr 2022 20:26:25 +0000
parents 1bcca1f2adb4
children 3caba2116858
comparison
equal deleted inserted replaced
16:44f168e1e14f 17:7f723407beb3
59 # Load preprocessed image files 59 # Load preprocessed image files
60 tomo.loadTomoStacks(args.input_stacks) 60 tomo.loadTomoStacks(args.input_stacks)
61 61
62 # Reconstruct tomography stacks 62 # Reconstruct tomography stacks
63 galaxy_param = {'center_offsets' : args.center_offsets, 'output_name' : args.output_data} 63 galaxy_param = {'center_offsets' : args.center_offsets, 'output_name' : args.output_data}
64 print(f'Here galaxy_param = {galaxy_param}')
65 logging.info(f'galaxy_param = {galaxy_param}')
64 tomo.reconstructTomoStacks(galaxy_param) 66 tomo.reconstructTomoStacks(galaxy_param)
67 print('Here')
65 68
66 # Displaying memory usage 69 # Displaying memory usage
67 logging.info(f'Memory usage: {tracemalloc.get_traced_memory()}') 70 logging.info(f'Memory usage: {tracemalloc.get_traced_memory()}')
68 71
69 # stopping memory monitoring 72 # stopping memory monitoring