Mercurial > repos > rv43 > tomo

comparison tomo.py @ 26:7791b6e7d4e6 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit a32862f90d84bccbdc4afd5bbc0ec268ea71216e"
author rv43
date Mon, 18 Apr 2022 20:54:59 +0000
parents 817a8101d2e4
children 9d631a5e118f
comparison
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25:1728c330a87d 26:7791b6e7d4e6
1181 # need index order column,theta for iradon, so take transpose 1181 # need index order column,theta for iradon, so take transpose
1182 sinogram_T = sinogram.T 1182 sinogram_T = sinogram.T
1183 center = sinogram.shape[1]/2 1183 center = sinogram.shape[1]/2
1184 1184
1185 # try automatic center finding routines for initial value 1185 # try automatic center finding routines for initial value
1186 num_core=1
1186 print(f'OK2 numcore = {num_core}') 1187 print(f'OK2 numcore = {num_core}')
1187 tomo_center = tomopy.find_center_vo(sinogram, ncore=num_core) 1188 tomo_center = tomopy.find_center_vo(sinogram, ncore=num_core)
1188 center_offset_vo = tomo_center-center 1189 center_offset_vo = tomo_center-center
1189 print(f'center_offset_vo = {center_offset_vo}') 1190 print(f'center_offset_vo = {center_offset_vo}')
1190 if self.test_mode: 1191 if self.test_mode: