Mercurial > repos > rv43 > tomo

comparison tomo_setup.py @ 61:75dd6e15f628 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 47b7bc203de6eac4d3e081b1fae8acb352f54b55"
author rv43
date Wed, 17 Aug 2022 12:11:20 +0000
parents 52db7707ff48
children 98a83f03d91b
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60:52db7707ff48 61:75dd6e15f628
280 stack['ref_height'] = ref_heights[tomo_index] 280 stack['ref_height'] = ref_heights[tomo_index]
281 tomo_stack_files.append(tomo_files[0]) 281 tomo_stack_files.append(tomo_files[0])
282 num_collections += 1 282 num_collections += 1
283 if num_collections != num_stack: 283 if num_collections != num_stack:
284 raise ValueError('Inconsistent number of data image sets') 284 raise ValueError('Inconsistent number of data image sets')
285 print(f'config:\n{tomo.config}')
286 return
287 285
288 # Preprocess the image files 286 # Preprocess the image files
289 galaxy_param = {'tdf_files' : tdf_files[0], 'tbf_files' : tbf_files[0], 287 galaxy_param = {'tdf_files' : tdf_files[0], 'tbf_files' : tbf_files[0],
290 'tomo_stack_files' : tomo_stack_files, 'output_name' : args.output_data} 288 'tomo_stack_files' : tomo_stack_files, 'output_name' : args.output_data}
291 tomo.genTomoStacks(galaxy_param) 289 tomo.genTomoStacks(galaxy_param)