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comparison tomo.py @ 19:4eba03628711 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 191fdd4eed8093f5cb5262fc1ff8275a242d69cd"
author rv43
date Mon, 18 Apr 2022 16:25:31 +0000
parents b0a816c8f66c
children c033f8843dc0
comparison
equal deleted inserted replaced
18:b0a816c8f66c 19:4eba03628711
1509 t0 = time() 1509 t0 = time()
1510 output_name = galaxy_param['output_name'] 1510 output_name = galaxy_param['output_name']
1511 logging.info(f'Saving preprocessed tomography stack to {output_name} ...') 1511 logging.info(f'Saving preprocessed tomography stack to {output_name} ...')
1512 save_stacks = {f'set_{stack["index"]}':tomo_stack 1512 save_stacks = {f'set_{stack["index"]}':tomo_stack
1513 for stack,tomo_stack in zip(stacks,self.tomo_stacks)} 1513 for stack,tomo_stack in zip(stacks,self.tomo_stacks)}
1514 logging.info(f'output_name = {output_name}')
1515 logging.info(f'save_stacks = {save_stacks}')
1516 np.savez(output_name, **save_stacks) 1514 np.savez(output_name, **save_stacks)
1517 logging.info(f'... done in {time()-t0:.2f} seconds!') 1515 logging.info(f'... done in {time()-t0:.2f} seconds!')
1518 1516
1519 del available_stacks 1517 del available_stacks
1520 1518