Mercurial > repos > rv43 > tomo

comparison tomo.py @ 23:3e336f5b6402 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit e023f10ae8d507a19015a033e176cb973262ab6e"
author rv43
date Mon, 18 Apr 2022 20:02:08 +0000
parents ac2f726f9054
children 817a8101d2e4
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22:ac2f726f9054 23:3e336f5b6402
1184 1184
1185 # try automatic center finding routines for initial value 1185 # try automatic center finding routines for initial value
1186 print('OK2') 1186 print('OK2')
1187 tomo_center = tomopy.find_center_vo(sinogram, ncore=num_core) 1187 tomo_center = tomopy.find_center_vo(sinogram, ncore=num_core)
1188 center_offset_vo = tomo_center-center 1188 center_offset_vo = tomo_center-center
1189 print(f'center_offset_vo = {center_offset_vo}')
1189 if self.test_mode: 1190 if self.test_mode:
1190 logging.info(f'Center at row {row} using Nghia Vo’s method = {center_offset_vo:.2f}') 1191 logging.info(f'Center at row {row} using Nghia Vo’s method = {center_offset_vo:.2f}')
1191 del sinogram_T 1192 del sinogram_T
1192 return float(center_offset_vo) 1193 return float(center_offset_vo)
1193 elif self.galaxy_flag: 1194 elif self.galaxy_flag: