Mercurial > repos > rv43 > tomo

comparison tomo_reconstruct.py @ 21:3caba2116858 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit e32e37ee46f47b185f924884685eb1d464761e86"
author rv43
date Mon, 18 Apr 2022 19:43:15 +0000
parents 7f723407beb3
children ba5866d0251d
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20:c033f8843dc0 21:3caba2116858
59 # Load preprocessed image files 59 # Load preprocessed image files
60 tomo.loadTomoStacks(args.input_stacks) 60 tomo.loadTomoStacks(args.input_stacks)
61 61
62 # Reconstruct tomography stacks 62 # Reconstruct tomography stacks
63 galaxy_param = {'center_offsets' : args.center_offsets, 'output_name' : args.output_data} 63 galaxy_param = {'center_offsets' : args.center_offsets, 'output_name' : args.output_data}
64 print(f'Here galaxy_param = {galaxy_param}')
65 logging.info(f'galaxy_param = {galaxy_param}') 64 logging.info(f'galaxy_param = {galaxy_param}')
66 tomo.reconstructTomoStacks(galaxy_param) 65 tomo.reconstructTomoStacks(galaxy_param)
67 print('Here')
68 66
69 # Displaying memory usage 67 # Displaying memory usage
70 logging.info(f'Memory usage: {tracemalloc.get_traced_memory()}') 68 logging.info(f'Memory usage: {tracemalloc.get_traced_memory()}')
71 69
72 # stopping memory monitoring 70 # stopping memory monitoring