Mercurial > repos > rv43 > tomo

comparison tomo_reconstruct.py @ 71:1cf15b61cd83 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit 366e516aef0735af2998c6ff3af037181c8d5213
author rv43
date Mon, 20 Mar 2023 13:56:57 +0000
parents fba792d5f83b
children d5e1d4ea2b7e
comparison
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70:97c4e2cbbad9 71:1cf15b61cd83
20 type=pathlib.Path, 20 type=pathlib.Path,
21 help='''Full or relative path to the input file (in Nexus format).''') 21 help='''Full or relative path to the input file (in Nexus format).''')
22 parser.add_argument('-c', '--center_file', 22 parser.add_argument('-c', '--center_file',
23 required=True, 23 required=True,
24 type=pathlib.Path, 24 type=pathlib.Path,
25 help='''Full or relative path to the center info file (in Nexus format).''') 25 help='''Full or relative path to the center info file (in yaml format).''')
26 parser.add_argument('-o', '--output_file', 26 parser.add_argument('-o', '--output_file',
27 required=False, 27 required=False,
28 type=pathlib.Path, 28 type=pathlib.Path,
29 help='''Full or relative path to the output file (in yaml format).''') 29 help='''Full or relative path to the output file (in Nexus format).''')
30 parser.add_argument('--galaxy_flag', 30 parser.add_argument('--galaxy_flag',
31 action='store_true', 31 action='store_true',
32 help='''Use this flag to run the scripts as a galaxy tool.''') 32 help='''Use this flag to run the scripts as a galaxy tool.''')
33 parser.add_argument('-l', '--log', 33 parser.add_argument('-l', '--log',
34 # type=argparse.FileType('w'), 34 # type=argparse.FileType('w'),