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comparison tomo_reconstruct.xml @ 15:1bcca1f2adb4 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 38c19bf5addbc46f45d598f981bb1a48f7bca691"
author rv43
date Wed, 13 Apr 2022 16:02:44 +0000
parents 845270a96464
children 44f168e1e14f
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14:50c8d19d5f89 15:1bcca1f2adb4
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 $__tool_directory__/tomo_reconstruct.py 8 $__tool_directory__/tomo_reconstruct.py
9 -i '$red_stacks' 9 -i '$red_stacks'
10 -c '$config' 10 -c '$config'
11 --center_offsets $center_offsets.lower_center_offset $center_offsets.upper_center_offset
11 --output_data 'output.npz' 12 --output_data 'output.npz'
12 --output_config 'output_config.yaml' 13 --output_config 'output_config.yaml'
13 -l '$log' 14 -l '$log'
14 ]]></command> 15 ]]></command>
15 <inputs> 16 <inputs>
16 <expand macro="common_inputs"/> 17 <expand macro="common_inputs"/>
17 <param name="red_stacks" type='data' format='npz' optional='false' label="Reduced stacks"/> 18 <param name="red_stacks" type='data' format='npz' optional='false' label="Reduced stacks"/>
19 <section name="center_offsets" title="Reconstruction center axis offsets">
20 <param name="lower_center_offset" type="float" optional="false" label="Lower center offset"/>
21 <param name="upper_center_offset" type="float" optional="false" label="Upper center offset"/>
22 </section>
18 </inputs> 23 </inputs>
19 <outputs> 24 <outputs>
20 <expand macro="common_outputs"/> 25 <expand macro="common_outputs"/>
21 <data name="output_data" format="npz" label="Reconstructed tomography stacks" from_work_dir="output_data.npz"/> 26 <data name="output_data" format="npz" label="Reconstructed tomography stacks" from_work_dir="output_data.npz"/>
22 </outputs> 27 </outputs>