# HG changeset patch
# User rv43
# Date 1679421377 0
# Node ID 7d9cf7592ad10ef0081b3f724e455cf98d20d5fb
# Parent  dfe7105739fa054bd2198d4fd88834acd5ed8b7f
planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty

diff -r dfe7105739fa -r 7d9cf7592ad1 tomo_reduce.xml
--- a/tomo_reduce.xml	Tue Mar 21 17:45:21 2023 +0000
+++ b/tomo_reduce.xml	Tue Mar 21 17:56:17 2023 +0000
@@ -26,8 +26,8 @@
             </param>
             <when value="full_range"/>
             <when value="enter_range">
-                <param name="low" type="integer" optional="true" label="Lower image range index in vertical direction"/>
-                <param name="upp" type="integer" optional="true" label="Upper image range index in vertical direction"/>
+                <param name="low" type="integer" value="-1" optional="false" label="Lower image range index in vertical direction"/>
+                <param name="upp" type="integer" value="-1" optional="false" label="Upper image range index in vertical direction"/>
             </when>
         </conditional>
     </inputs>
diff -r dfe7105739fa -r 7d9cf7592ad1 workflow/run_tomo.py
--- a/workflow/run_tomo.py	Tue Mar 21 17:45:21 2023 +0000
+++ b/workflow/run_tomo.py	Tue Mar 21 17:56:17 2023 +0000
@@ -988,7 +988,12 @@
             if self.galaxy_flag:
                 if img_x_bounds is None:
                     img_x_bounds = (0, first_image.shape[0])
-                elif not is_index_range(img_x_bounds, ge=0, le=first_image.shape[0]):
+                elif is_int_pair(img_x_bounds, ge=-1, le=first_image.shape[0]):
+                    if img_x_bounds[0] == -1:
+                        img_x_bounds[0] = 0
+                    if img_x_bounds[1] == -1:
+                        img_x_bounds[1] = first_image.shape[0]
+                if is_index_range(img_x_bounds, ge=0, le=first_image.shape[0]):
                     raise ValueError(f'Invalid parameter img_x_bounds ({img_x_bounds})')
             else:
                 quick_imshow(first_image, title=title)