Mercurial > repos > rv43 > chess_tomo

diff tomo_reduce.xml @ 13:e4963769076b draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Tue, 21 Mar 2023 14:07:35 +0000
parents 0f553c8d7b98
children da3116b620b3
line wrap: on
line diff
--- a/tomo_reduce.xml	Tue Mar 21 13:39:37 2023 +0000
+++ b/tomo_reduce.xml	Tue Mar 21 14:07:35 2023 +0000
@@ -11,7 +11,7 @@
             --input_file '$input_file'
             --output_file 'output.nxs'
             --galaxy_flag
-            --img_x_bounds $x_bounds.x_bound_low $x_bounds.x_bound_upp
+            --img_x_bounds $img_x_bounds.low $img_x_bounds.upp
             -l '$log'
         ]]>
     </command>
@@ -20,14 +20,14 @@
         <!--
         <param name="input_file" type='data' format='yaml' optional='false' label="Input config"/>
         -->
-        <section name="x_bounds" title="Reduction x bounds">
-            <param name="x_bound_low" type="integer" value="-1" label="Lower bound"/>
-            <param name="x_bound_upp" type="integer" value="-1" label="Upper bound"/>
+        <section name="img_x_bounds" title="Reduction x bounds">
+            <param name="low" type="integer" value="-1" label="Lower bound"/>
+            <param name="upp" type="integer" value="-1" label="Upper bound"/>
         </section>
     </inputs>
     <outputs>
         <expand macro="common_outputs"/>
-        <collection name="tomo_reduce_plots" type="list" label="Tomo data reduction images">
+        <collection name="tomo_reduce_plots" type="list" label="Data reduction images">
             <discover_datasets pattern="__name_and_ext__" directory="tomo_reduce_plots"/>
         </collection>
         <data name="output_file" format="nxs" label="Reduced tomography data" from_work_dir="output.nxs"/>