Mercurial > repos > rv43 > chess_tomo

diff tomo_reduce.xml @ 18:dee0b25fcabe draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Tue, 21 Mar 2023 15:35:48 +0000
parents da3116b620b3
children 7a7233e212be
line wrap: on
line diff
--- a/tomo_reduce.xml	Tue Mar 21 14:37:25 2023 +0000
+++ b/tomo_reduce.xml	Tue Mar 21 15:35:48 2023 +0000
@@ -8,18 +8,15 @@
         <![CDATA[
             mkdir tomo_reduce_plots;
             $__tool_directory__/tomo_reduce.py
-            --input_file '$input_file'
-            --output_file 'output.nex'
+            --input_file "$input_file"
+            --output_file "output.nex"
             --galaxy_flag
             --img_x_bounds $img_x_bounds.low $img_x_bounds.upp
-            -l '$log'
+            -l "$log"
         ]]>
     </command>
     <inputs>
         <param name="input_file" type="data" optional="false" label="Input file"/>
-        <!--
-        <param name="input_file" type='data' format='yaml' optional='false' label="Input config"/>
-        -->
         <section name="img_x_bounds" title="Reduction x bounds">
             <param name="low" type="integer" value="-1" label="Lower bound"/>
             <param name="upp" type="integer" value="-1" label="Upper bound"/>