Mercurial > repos > rv43 > chess_tomo

diff workflow/run_tomo.py @ 8:c99fc6a32869 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Mon, 20 Mar 2023 19:21:09 +0000
parents 05335876d167
children 1dbb29320ce8
line wrap: on
line diff
--- a/workflow/run_tomo.py	Mon Mar 20 19:13:06 2023 +0000
+++ b/workflow/run_tomo.py	Mon Mar 20 19:21:09 2023 +0000
@@ -164,8 +164,9 @@
             self.num_core= cpu_count()
 
     def read(self, filename):
+        print(f'looking for {filename}')
         extension = os_path.splitext(filename)[1]
-        if extension == '.yml' or extension == '.yaml':
+        if extension == '.yml' or extension == '.yaml' or self.galaxy_flag and extension == '.dat':
             with open(filename, 'r') as f:
                 config = safe_load(f)
 #            if len(config) > 1: