Mercurial > repos > rv43 > chess_tomo

diff workflow/run_tomo.py @ 5:543dba81eb15 draft
planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author: rv43
date: Mon, 20 Mar 2023 18:54:48 +0000
parents: 9aa288729b9a
children: 05335876d167
--- a/workflow/run_tomo.py	Mon Mar 20 18:44:23 2023 +0000
+++ b/workflow/run_tomo.py	Mon Mar 20 18:54:48 2023 +0000
@@ -873,7 +873,10 @@
 
         # Select image bounds
         title = f'tomography image at theta={round(theta, 2)+0}'
-        if (img_x_bounds is not None and not is_index_range(img_x_bounds, ge=0,
+        if img_x_bounds is not None:
+            if is_int_pair(img_x_bounds)i and img_x_bounds[0] == -1 and img_x_bounds[1] == -1
+                img_x_bounds = None
+            elif not is_index_range(img_x_bounds, ge=0,
                 le=first_image.shape[0])):
             raise ValueError(f'Invalid parameter img_x_bounds ({img_x_bounds})')
         if nxentry.instrument.source.attrs['station'] in ('id1a3', 'id3a'):