diff workflow/run_tomo.py @ 6:05335876d167 draft

planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Mon, 20 Mar 2023 19:01:48 +0000
parents 543dba81eb15
children c99fc6a32869
line wrap: on
line diff
--- a/workflow/run_tomo.py	Mon Mar 20 18:54:48 2023 +0000
+++ b/workflow/run_tomo.py	Mon Mar 20 19:01:48 2023 +0000
@@ -874,11 +874,10 @@
         # Select image bounds
         title = f'tomography image at theta={round(theta, 2)+0}'
         if img_x_bounds is not None:
-            if is_int_pair(img_x_bounds)i and img_x_bounds[0] == -1 and img_x_bounds[1] == -1
+            if is_int_pair(img_x_bounds) and img_x_bounds[0] == -1 and img_x_bounds[1] == -1:
                 img_x_bounds = None
-            elif not is_index_range(img_x_bounds, ge=0,
-                le=first_image.shape[0])):
-            raise ValueError(f'Invalid parameter img_x_bounds ({img_x_bounds})')
+            elif not is_index_range(img_x_bounds, ge=0, le=first_image.shape[0]):
+                raise ValueError(f'Invalid parameter img_x_bounds ({img_x_bounds})')
         if nxentry.instrument.source.attrs['station'] in ('id1a3', 'id3a'):
             pixel_size = nxentry.instrument.detector.x_pixel_size
             # Try to get a fit from the bright field