Mercurial > repos > rv43 > chess_tomo

comparison tomo_reduce.py @ 12:fa511fc2cfd5 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
author rv43
date Tue, 21 Mar 2023 13:39:37 +0000
parents 05335876d167
children e4963769076b
comparison
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11:9c48ef48c604 12:fa511fc2cfd5
77 # Instantiate Tomo object 77 # Instantiate Tomo object
78 tomo = Tomo(galaxy_flag=args.galaxy_flag) 78 tomo = Tomo(galaxy_flag=args.galaxy_flag)
79 79
80 # Read input file 80 # Read input file
81 data = tomo.read(args.input_file) 81 data = tomo.read(args.input_file)
82 print(f'data:\n{data.tree}')
83 return
84 82
85 # Generate reduced tomography images 83 # Generate reduced tomography images
86 data = tomo.gen_reduced_data(data, img_x_bounds=args.img_x_bounds) 84 data = tomo.gen_reduced_data(data, img_x_bounds=args.img_x_bounds)
87 85
88 # Write output file 86 # Write output file