Mercurial > repos > rv43 > chess_tomo

comparison workflow/run_tomo.py @ 14:da3116b620b3 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Tue, 21 Mar 2023 14:25:23 +0000
parents 9c48ef48c604
children b1c2b7d26149
comparison
equal deleted inserted replaced
13:e4963769076b 14:da3116b620b3
372 372
373 # Lower row center 373 # Lower row center
374 if self.test_mode: 374 if self.test_mode:
375 lower_row = self.test_config['lower_row'] 375 lower_row = self.test_config['lower_row']
376 elif self.galaxy_flag: 376 elif self.galaxy_flag:
377 if center_rows is None: 377 if center_rows is None or center_rows[0] = -1:
378 lower_row = 0 378 lower_row = 0
379 else: 379 else:
380 lower_row = min(center_rows) 380 lower_row = min(center_rows)
381 if not 0 <= lower_row < tomo_fields_shape[2]-1: 381 if not 0 <= lower_row < tomo_fields_shape[2]-1:
382 raise ValueError(f'Invalid parameter center_rows ({center_rows})') 382 raise ValueError(f'Invalid parameter center_rows ({center_rows})')
398 398
399 # Upper row center 399 # Upper row center
400 if self.test_mode: 400 if self.test_mode:
401 upper_row = self.test_config['upper_row'] 401 upper_row = self.test_config['upper_row']
402 elif self.galaxy_flag: 402 elif self.galaxy_flag:
403 if center_rows is None: 403 if center_rows is None or center_rows[1] = -1:
404 upper_row = tomo_fields_shape[2]-1 404 upper_row = tomo_fields_shape[2]-1
405 else: 405 else:
406 upper_row = max(center_rows) 406 upper_row = max(center_rows)
407 if not lower_row < upper_row < tomo_fields_shape[2]: 407 if not lower_row < upper_row < tomo_fields_shape[2]:
408 raise ValueError(f'Invalid parameter center_rows ({center_rows})') 408 raise ValueError(f'Invalid parameter center_rows ({center_rows})')