Mercurial > repos > rv43 > chess_tomo
comparison tomo_reconstruct.xml @ 22:b156e4cee6d7 draft
planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
| author | rv43 |
|---|---|
| date | Tue, 21 Mar 2023 15:52:16 +0000 |
| parents | |
| children | fbbd82938303 |
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| 21:7a7233e212be | 22:b156e4cee6d7 |
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| 1 <tool id="tomo_reconstruct" name="Tomo Reconstruction" version="0.3.0" python_template_version="3.9"> | |
| 2 <description>Perform a tomography reconstruction</description> | |
| 3 <macros> | |
| 4 <import>tomo_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"/> | |
| 7 <command detect_errors="exit_code"> | |
| 8 <![CDATA[ | |
| 9 mkdir tomo_reconstruct_plots; | |
| 10 $__tool_directory__/tomo_reconstruct.py | |
| 11 --input_file "$input_file" | |
| 12 --center_file "$center_file" | |
| 13 --output_file "output.nex" | |
| 14 --galaxy_flag | |
| 15 -l "$log" | |
| 16 ]]> | |
| 17 </command> | |
| 18 <inputs> | |
| 19 <expand macro="common_inputs"/> | |
| 20 <param name="input_file" type="data" format="nex" optional="false" label="Reduced tomography data"/> | |
| 21 <param name="center_file" type="data" format="yaml" optional="false" label="Center axis input file"/> | |
| 22 </inputs> | |
| 23 <outputs> | |
| 24 <expand macro="common_outputs"/> | |
| 25 <collection name="tomo_reconstruct_plots" type="list" label="Data recontructed images"> | |
| 26 <discover_datasets pattern="__name_and_ext__" directory="tomo_reconstruct_plots"/> | |
| 27 </collection> | |
| 28 <data name="output_file" format="nex" label="Reconstructed tomography data" from_work_dir="output.nex"/> | |
| 29 </outputs> | |
| 30 <help><![CDATA[ | |
| 31 Reconstruct tomography images. | |
| 32 ]]></help> | |
| 33 <expand macro="citations"/> | |
| 34 </tool> |